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Fix for python 3.13 #82

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Merged
pgleeson merged 1 commit into from
Jun 13, 2025
Merged

Fix for python 3.13 #82

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2 changes: 1 addition & 1 deletion .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ jobs:
strategy:
fail-fast: false
matrix:
python-version: ["3.10", "3.11", "3.12"]
python-version: ["3.10", "3.11", "3.12", "3.13"]
env:
JNML_HOME: "/home/runner/work/NeuroMLlite/NeuroMLlite/jNeuroML"
HDF5_DISABLE_VERSION_CHECK: 1
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25 changes: 12 additions & 13 deletions examples/Example6.py
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Original file line number Diff line number Diff line change
Expand Up @@ -111,25 +111,24 @@ def generate(ref="Example6_PyNN", add_inputs=True):
pop_id = "%s_%s" % (l, t)
pops.append(pop_id)
ref = "l%s%s" % (l[1:], t.lower())
exec(
ref
+ " = Population(id=pop_id, size='int(%s*N_scaling)'%N_full[l][t], component=cell.id, properties={'color':color, 'type':t})"
)
exec("%s.random_layout = RandomLayout(region = r.id)" % ref)
exec("net.populations.append(%s)" % ref)
exec("pop_dict['%s'] = %s" % (pop_id, ref))
d = {}
d[ref] = Population(id=pop_id, size='int(%s*N_scaling)'%N_full[l][t], component=cell.id, properties={'color':color, 'type':t})

# Instead of exec, set the attribute directly using locals()
d[ref].random_layout = RandomLayout(region=r.id)
net.populations.append(d[ref])
pop_dict['%s'% (pop_id)] = d[ref]

if add_inputs:
color = ".8 .8 .8"
input_id = "%s_%s_input" % (l, t)
input_pops.append(input_id)
input_ref = "l%s%s_i" % (l[1:], t.lower())
exec(
input_ref
+ " = Population(id=input_id, size='int(%s*N_scaling)'%N_full[l][t], component=input_cell.id, properties={'color':color})"
)
exec("%s.random_layout = RandomLayout(region = r.id)" % input_ref)
exec("net.populations.append(%s)" % input_ref)
ir = {}
ir[input_ref] = Population(id=input_id, size='int(%s*N_scaling)'%N_full[l][t], component=input_cell.id, properties={'color':color})

ir[input_ref].random_layout = RandomLayout(region = r.id)
net.populations.append(ir[input_ref])

# l23i = Population(id='L23_I', size=int(100*scale), component=cell.id, properties={'color':})
# l23ei = Population(id='L23_E_input', size=int(100*scale), component=input_cell.id)
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2 changes: 1 addition & 1 deletion examples/LEMS_SimExample3.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

<!--

This LEMS file has been automatically generated using PyNeuroML v1.3.17 (libNeuroML v0.6.6)
This LEMS file has been automatically generated using PyNeuroML v1.3.18 (libNeuroML v0.6.7)

-->

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2 changes: 1 addition & 1 deletion examples/LEMS_SimExample4.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

<!--

This LEMS file has been automatically generated using PyNeuroML v1.3.17 (libNeuroML v0.6.6)
This LEMS file has been automatically generated using PyNeuroML v1.3.18 (libNeuroML v0.6.7)

-->

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