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Jun 21, 2025
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add IBL project #1151

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add IBL project
mayofaulkner Jun 17, 2025
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Remove dud links from IBL dataset and remove references to steinmetz …
mayofaulkner Jun 20, 2025
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upload notebooks
mayofaulkner Jun 20, 2025
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mayofaulkner Jun 20, 2025
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621 changes: 621 additions & 0 deletions projects/behavior_and_theory/IBL_behavior_data.ipynb
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18 changes: 5 additions & 13 deletions projects/behavior_and_theory/README.md
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Expand Up @@ -18,23 +18,15 @@ Credit for data curation: Ann Kennedy

## IBL

The IBL dataset ([youtube](https://youtube.com/watch?v=NofrFH8FRZU)) is a visual decision-making task, that is very similar to the one used in the Steinmetz dataset.
The IBL dataset ([youtube](https://youtube.com/watch?v=NofrFH8FRZU)) contains behavioral data collected from 140 mice performing a visual decision-making task. It includes reaction times and various task-related variables covering the full learning trajectory of each mouse, from naive to expert performance.

Credit for data curation: Eric DeWitt and the IBL team

This notebook is currently available:

| | Run | View |
| - | --- | ---- |
| Psychometric notebook | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/drive/14OtLUEiyhrPTPsXetg8VQrTk1CLhBCW5) | |
Credit for data curation: Eric DeWitt and the IBL team

These will be available next week:
| | Run | View |
|-----------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
| Loader notebook | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/NeuromatchAcademy/course-content/blob/main/projects/behavior/IBL_behavior_data.ipynb) | [![View the notebook](https://img.shields.io/badge/render-nbviewer-orange.svg)](https://nbviewer.jupyter.org/github/NeuromatchAcademy/course-content/blob/main/projects/behavior/IBL_behavior_data.ipynb?flush_cache=true) |

| | Run | View |
| - | --- | ---- |
| Exploration notebook | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/int-brain-lab/nma-ibl/blob/master/01-Explore%20IBL%20behavior%20data%20pipeline.ipynb) | [![View the notebook](https://img.shields.io/badge/render-nbviewer-orange.svg)](https://nbviewer.jupyter.org/github/int-brain-lab/nma-ibl/blob/master/01-Explore%20IBL%20behavior%20data%20pipeline.ipynb?flush_cache=true) |
| Psychometric notebook | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/int-brain-lab/nma-ibl/blob/master/02-Plot%20Psychometric%20curve.ipynb) | [![View the notebook](https://img.shields.io/badge/render-nbviewer-orange.svg)](https://nbviewer.jupyter.org/github/int-brain-lab/nma-ibl/blob/master/02-Plot%20Psychometric%20curve.ipynb?flush_cache=true) |
| Additional analyses | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/int-brain-lab/nma-ibl/blob/master/03-Replication%20of%20paper%20figures.ipynb) | [![View the notebook](https://img.shields.io/badge/render-nbviewer-orange.svg)](https://nbviewer.jupyter.org/github/int-brain-lab/nma-ibl/blob/master/03-Replication%20of%20paper%20figures.ipynb?flush_cache=true) |

## Laquitaine & Gardner, Neuron, 2017

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