IRMA - IRMA was designed for the robust assembly, variant calling, and phasing of highly variable RNA viruses.

Commands used

irma $module $input_type.forward $input_type.reverse resultDir 2>Err_1.out

IRMA FLU data/sequence/21331/2/251010_M09180.XXXXXXXX_R1_001.fastq /opt/irida/data/sequence/21332/2/251010_M09180.XXXXXXXX_S18_R2_001.fastq resultDir