Create Submission_to_NCBI.md by Thomieh73 · Pull Request #52 · NorwegianVeterinaryInstitute/nvi-documentation

Thomieh73 · 2024-02-26T15:22:16Z

I have created a document describing the submission process of one or more bacterial genomes using the NCBI submission system.

karinlag

Looks good, some small confusing issues, but should be easily resolved.

I need to rewrite the document because the submission process is very different from the way I had written it up the last time.

with the text for submission of BioSamples to the NCBI databases

Thomieh73 · 2024-04-24T14:33:56Z

Hi @karinlag Can you read the text for the NCBI Submission of reads to the SRA database using VIGAS. It turns out that it is needed that you do it like this:

Check if Bioproject is there or not?
If there is not a bioproject then create it.
If there is a bioproject you can go straight to creating a biosample(s) registration.
When a bioproject is available you can now create Biosamples
When Bioproject and Biosamples have been registered at NCBI, you can select the sequence samples in VIGAS for submission to the SRA database.

I have not yet written the last step.

karinlag · 2024-04-24T15:03:22Z

@ajkarloss since you are handling the VIGAS sysstem, can you give me a first pass over this before I dig in?

I added how to submit using VIGAS. And I added how to check if the submission worked.

novica · 2024-09-19T15:58:45Z

Are people still working on this?

Create Submission_to_NCBI.md

2432d12

I have created a document describing the submission process of one or more bacterial genomes using the NCBI submission system.