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Update release files #310

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6 changes: 3 additions & 3 deletions cob-base.owl
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Expand Up @@ -10,12 +10,12 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/cob/cob-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/cob/releases/2025-06-30/cob-base.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/cob/releases/2025-12-12/cob-base.owl"/>
<dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
<terms:description xml:lang="en">COB brings together key terms from a wide range of OBO projects to improve interoperability.</terms:description>
<terms:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
<terms:title xml:lang="en">Core Ontology for Biology and Biomedicine</terms:title>
<owl:versionInfo>2025-06-30</owl:versionInfo>
<owl:versionInfo>2025-12-12</owl:versionInfo>
</owl:Ontology>


Expand Down Expand Up @@ -461,7 +461,7 @@
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A planned process that intends to output material entities from input material entities</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">A completely executed planned process that intends to output material entities from input material entities</obo:IAO_0000115>
<rdfs:label xml:lang="en">material processing</rdfs:label>
</owl:Class>

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26 changes: 13 additions & 13 deletions cob-root.owl
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Expand Up @@ -9,11 +9,11 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/cob.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/cob/releases/2025-06-30/cob-root.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/cob/releases/2025-12-12/cob-root.owl"/>
<terms:description xml:lang="en">COB brings together key terms from a wide range of OBO projects to improve interoperability.</terms:description>
<terms:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
<terms:title xml:lang="en">Core Ontology for Biology and Biomedicine</terms:title>
<owl:versionInfo>2025-06-30</owl:versionInfo>
<owl:versionInfo>2025-12-12</owl:versionInfo>
</owl:Ontology>


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<!-- http://purl.obolibrary.org/obo/OBI_0000293 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000293">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/COB_0000035"/>
<obo:IAO_0000115>The inverse property of is specified input of</obo:IAO_0000115>
<rdfs:label xml:lang="en">has specified input</rdfs:label>
</owl:ObjectProperty>
Expand All @@ -165,8 +165,8 @@
<!-- http://purl.obolibrary.org/obo/OBI_0000295 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000295">
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<obo:IAO_0000115>A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.</obo:IAO_0000115>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/COB_0000035"/>
<obo:IAO_0000115>A relation between a completely executed planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.</obo:IAO_0000115>
<rdfs:label xml:lang="en">is specified input of</rdfs:label>
</owl:ObjectProperty>

Expand All @@ -175,7 +175,7 @@
<!-- http://purl.obolibrary.org/obo/OBI_0000299 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000299">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/COB_0000035"/>
<obo:IAO_0000115>The inverse property of is specified output of</obo:IAO_0000115>
<rdfs:label xml:lang="en">has specified output</rdfs:label>
</owl:ObjectProperty>
Expand All @@ -185,8 +185,8 @@
<!-- http://purl.obolibrary.org/obo/OBI_0000312 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000312">
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.</obo:IAO_0000115>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/COB_0000035"/>
<obo:IAO_0000115 xml:lang="en">A relation between a completely executed planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.</obo:IAO_0000115>
<rdfs:label xml:lang="en">is specified output of</rdfs:label>
</owl:ObjectProperty>

Expand Down Expand Up @@ -757,7 +757,7 @@
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A planned process that intends to output material entities from input material entities</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">A completely executed planned process that intends to output material entities from input material entities</obo:IAO_0000115>
<rdfs:label xml:lang="en">material processing</rdfs:label>
</owl:Class>

Expand Down Expand Up @@ -1098,7 +1098,7 @@
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A plan is a realizable entity that is the inheres in a bearer who is committed to realizing it as a planned process.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">A plan is a realizable entity that is the inheres in a bearer who is committed to realizing it as a completely executed planned process.</obo:IAO_0000115>
<rdfs:label xml:lang="en">plan</rdfs:label>
</owl:Class>

Expand All @@ -1107,7 +1107,7 @@
<!-- http://purl.obolibrary.org/obo/OBI_0000659 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000659">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000035"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
Expand Down Expand Up @@ -1163,7 +1163,7 @@
<!-- http://purl.obolibrary.org/obo/OBI_0200000 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000035"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
Expand All @@ -1178,7 +1178,7 @@
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A planned process that produces output data from input data.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">A completely executed planned process that produces output data from input data.</obo:IAO_0000115>
<rdfs:label xml:lang="en">data transformation</rdfs:label>
</owl:Class>

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24 changes: 12 additions & 12 deletions cob.owl
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Expand Up @@ -9,11 +9,11 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/cob.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/cob/releases/2025-06-30/cob.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/cob/releases/2025-12-12/cob.owl"/>
<terms:description xml:lang="en">COB brings together key terms from a wide range of OBO projects to improve interoperability.</terms:description>
<terms:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
<terms:title xml:lang="en">Core Ontology for Biology and Biomedicine</terms:title>
<owl:versionInfo>2025-06-30</owl:versionInfo>
<owl:versionInfo>2025-12-12</owl:versionInfo>
</owl:Ontology>


Expand Down Expand Up @@ -155,7 +155,7 @@
<!-- http://purl.obolibrary.org/obo/OBI_0000293 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000293">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/COB_0000035"/>
<obo:IAO_0000115>The inverse property of is specified input of</obo:IAO_0000115>
<rdfs:label xml:lang="en">has specified input</rdfs:label>
</owl:ObjectProperty>
Expand All @@ -165,8 +165,8 @@
<!-- http://purl.obolibrary.org/obo/OBI_0000295 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000295">
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<obo:IAO_0000115>A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.</obo:IAO_0000115>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/COB_0000035"/>
<obo:IAO_0000115>A relation between a completely executed planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.</obo:IAO_0000115>
<rdfs:label xml:lang="en">is specified input of</rdfs:label>
</owl:ObjectProperty>

Expand All @@ -175,7 +175,7 @@
<!-- http://purl.obolibrary.org/obo/OBI_0000299 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000299">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/COB_0000035"/>
<obo:IAO_0000115>The inverse property of is specified output of</obo:IAO_0000115>
<rdfs:label xml:lang="en">has specified output</rdfs:label>
</owl:ObjectProperty>
Expand All @@ -185,8 +185,8 @@
<!-- http://purl.obolibrary.org/obo/OBI_0000312 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000312">
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.</obo:IAO_0000115>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/COB_0000035"/>
<obo:IAO_0000115 xml:lang="en">A relation between a completely executed planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.</obo:IAO_0000115>
<rdfs:label xml:lang="en">is specified output of</rdfs:label>
</owl:ObjectProperty>

Expand Down Expand Up @@ -747,7 +747,7 @@
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A planned process that intends to output material entities from input material entities</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">A completely executed planned process that intends to output material entities from input material entities</obo:IAO_0000115>
<rdfs:label xml:lang="en">material processing</rdfs:label>
</owl:Class>

Expand Down Expand Up @@ -1068,7 +1068,7 @@
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A plan is a realizable entity that is the inheres in a bearer who is committed to realizing it as a planned process.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">A plan is a realizable entity that is the inheres in a bearer who is committed to realizing it as a completely executed planned process.</obo:IAO_0000115>
<rdfs:label xml:lang="en">plan</rdfs:label>
</owl:Class>

Expand All @@ -1077,7 +1077,7 @@
<!-- http://purl.obolibrary.org/obo/OBI_0200000 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000035"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
Expand All @@ -1092,7 +1092,7 @@
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A planned process that produces output data from input data.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">A completely executed planned process that produces output data from input data.</obo:IAO_0000115>
<rdfs:label xml:lang="en">data transformation</rdfs:label>
</owl:Class>

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6 changes: 3 additions & 3 deletions cob.tsv
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Expand Up @@ -30,7 +30,7 @@ COB:0000077 obsolete action specification
COB:0000080 complex of molecules A complex of two or more molecules that are not covalently bound. BFO:0000040 material entity BFO:0000051 some COB:0000013 has part some molecule
COB:0000082 planned process A process that is initiated by an agent who intends to carry out a plan to achieve an objective through one or more actions as described in a plan specification. BFO:0000015 process
COB:0000083 failed planned process COB:0000082 planned process
COB:0000110 material processing A planned process that intends to output material entities from input material entities COB:0000035 completely executed planned process (OBI:0000293 some BFO:0000040) and (OBI:0000299 some BFO:0000040) (has specified input some material entity) and (has specified output some material entity)
COB:0000110 material processing A completely executed planned process that intends to output material entities from input material entities COB:0000035 completely executed planned process (OBI:0000293 some BFO:0000040) and (OBI:0000299 some BFO:0000040) (has specified input some material entity) and (has specified output some material entity)
COB:0000116 obsolete cellular membrane
COB:0000122 obsolete physical information carrier
COB:0000502 characteristic
Expand All @@ -56,8 +56,8 @@ MOP:0000543 physico-chemical process A process in which at least one of the part
NCBITaxon:131567 cellular organism COB:0000022 organism
OBI:0000066 investigation a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s). COB:0000035 completely executed planned process
OBI:0000070 assay A planned process that has the objective to produce information about a material entity (the evaluant) by examining it. COB:0000035 completely executed planned process (OBI:0000293 some BFO:0000040) and (OBI:0000299 some IAO:0000027) (has specified input some material entity) and (has specified output some data item)
OBI:0000260 plan A plan is a realizable entity that is the inheres in a bearer who is committed to realizing it as a planned process. BFO:0000017 realizable entity RO:0000059 some IAO:0000104 concretizes some plan specification
OBI:0200000 data transformation A planned process that produces output data from input data. COB:0000082 planned process (OBI:0000293 some IAO:0000027) and (OBI:0000299 some IAO:0000027) (has specified input some data item) and (has specified output some data item)
OBI:0000260 plan A plan is a realizable entity that is the inheres in a bearer who is committed to realizing it as a completely executed planned process. BFO:0000017 realizable entity RO:0000059 some IAO:0000104 concretizes some plan specification
OBI:0200000 data transformation A completely executed planned process that produces output data from input data. COB:0000035 completely executed planned process (OBI:0000293 some IAO:0000027) and (OBI:0000299 some IAO:0000027) (has specified input some data item) and (has specified output some data item)
PATO:0000125 mass A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. COB:0000502 characteristic
PATO:0002193 electric charge A molecular quality that inheres in a molecular entity by virtue of the overall electric charge of the molecule, which is due to a comparison between the total number of electrons and the total number of protons. COB:0000502 characteristic
PCO:0000000 collection of organisms A material entity that consists of two or more organisms, viruses, or viroids. BFO:0000040 material entity BFO:0000051 some COB:0000022 has part some organism
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