Update OBO foundry metadata

_config.yml

@@ -2135,6 +2135,59 @@ ontologies:
     label: Fungal
   title: Fungal gross anatomy
   tracker: https://github.com/obophenotype/fungal-anatomy-ontology/issues
+- activity_status: active
+  build:
+    checkout: git clone https://github.com/foundingGIDE/fbbi.git
+    path: .
+    system: git
+  contact:
+    email: damien@gerbi-gmb.de
+    github: gouttegd
+    label: Damien Goutte-Gattat
+    orcid: 0000-0002-6095-8718
+  dependencies:
+  - id: iao
+  - id: omo
+  - id: ro
+  description: An ontology for the description of sample preparation, visualization,
+    and imaging methods used in biomedical research.
+  domain: investigations
+  homepage: https://github.com/foundingGIDE/fbbi
+  id: fbbi
+  layout: ontology_detail
+  license:
+    label: CC BY 4.0
+    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
+    url: https://creativecommons.org/licenses/by/4.0/
+  ontology_purl: http://purl.obolibrary.org/obo/fbbi.owl
+  preferredPrefix: FBbi
+  products:
+  - id: fbbi.owl
+    ontology_purl: http://purl.obolibrary.org/obo/fbbi.owl
+  - id: fbbi.obo
+    ontology_purl: http://purl.obolibrary.org/obo/fbbi.obo
+  - id: fbbi/fbbi-base.owl
+    ontology_purl: http://purl.obolibrary.org/obo/fbbi/fbbi-base.owl
+  - id: fbbi/fbbi-base.obo
+    ontology_purl: http://purl.obolibrary.org/obo/fbbi/fbbi-base.obo
+  repository: https://github.com/foundingGIDE/fbbi
+  tags:
+  - imaging experiments
+  title: Biological Imaging Methods Ontology
+  tracker: https://github.com/foundingGIDE/fbbi/issues
+  usages:
+  - description: FlyBase uses FBbi to annotate its image collection.
+    examples:
+    - description: images annotated to "scanning electron micrograph"
+      url: https://flybase.org/cgi-bin/fbcvquery.pl?mode=subtreehits&cvterm=FBbi:00000257%3EFBim
+    user: https://flybase.org
+  - description: Virtual Fly Brain uses FBbi to annotate images.
+    user: https://virtualflybrain.org
+  - description: The Cell Image Library uses FBbi to annotate images.
+    examples:
+    - description: An image annotate with several terms from FBbi.
+      url: https://www.cellimagelibrary.org/images/13654
+    user: https://www.cellimagelibrary.org
 - activity_status: active
   browsers:
   - label: FB
@@ -8424,35 +8477,6 @@ ontologies:
       platform for integrating, mining and analyzing microbiome experiments.
     type: annotation and query
     user: https://microbiomedb.org
-- activity_status: inactive
-  build:
-    method: obo2owl
-    source_url: https://raw.githubusercontent.com/dosumis/fbbi/master/src/ontology/fbbi.obo
-  contact:
-    email: wawong@gmail.com
-    github: wawong
-    label: Willy Wong
-    orcid: 0000-0002-8841-5870
-  description: A structured controlled vocabulary of sample preparation, visualization
-    and imaging methods used in biomedical research.
-  domain: investigations
-  homepage: http://cellimagelibrary.org/
-  id: fbbi
-  layout: ontology_detail
-  license:
-    label: CC BY 4.0
-    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
-    url: https://creativecommons.org/licenses/by/4.0/
-  ontology_purl: http://purl.obolibrary.org/obo/fbbi.owl
-  preferredPrefix: FBbi
-  products:
-  - id: fbbi.owl
-    ontology_purl: http://purl.obolibrary.org/obo/fbbi.owl
-  repository: https://github.com/CRBS/Biological_Imaging_Methods_Ontology
-  tags:
-  - imaging experiments
-  title: Biological Imaging Methods Ontology
-  tracker: https://github.com/CRBS/Biological_Imaging_Methods_Ontology/issues
 - activity_status: inactive
   contact:
     email: druzinsk@uic.edu

registry/obo_prefixes.ttl

@@ -52,6 +52,7 @@
 ,[ sh:prefix "EXMO" ; sh:namespace "http://purl.obolibrary.org/obo/EXMO_"]
 ,[ sh:prefix "ExO" ; sh:namespace "http://purl.obolibrary.org/obo/ExO_"]
 ,[ sh:prefix "FAO" ; sh:namespace "http://purl.obolibrary.org/obo/FAO_"]
+,[ sh:prefix "FBbi" ; sh:namespace "http://purl.obolibrary.org/obo/FBbi_"]
 ,[ sh:prefix "FBbt" ; sh:namespace "http://purl.obolibrary.org/obo/FBbt_"]
 ,[ sh:prefix "FBcv" ; sh:namespace "http://purl.obolibrary.org/obo/FBcv_"]
 ,[ sh:prefix "FBdv" ; sh:namespace "http://purl.obolibrary.org/obo/FBdv_"]
@@ -195,7 +196,6 @@
 ,[ sh:prefix "SIBO" ; sh:namespace "http://purl.obolibrary.org/obo/SIBO_"]
 ,[ sh:prefix "VariO" ; sh:namespace "http://purl.obolibrary.org/obo/VariO_"]
 ,[ sh:prefix "EUPATH" ; sh:namespace "http://purl.obolibrary.org/obo/EUPATH_"]
-,[ sh:prefix "FBbi" ; sh:namespace "http://purl.obolibrary.org/obo/FBbi_"]
 ,[ sh:prefix "MFMO" ; sh:namespace "http://purl.obolibrary.org/obo/MFMO_"]
 ,[ sh:prefix "MICRO" ; sh:namespace "http://purl.obolibrary.org/obo/MICRO_"]
 ,[ sh:prefix "OGSF" ; sh:namespace "http://purl.obolibrary.org/obo/OGSF_"]

registry/ontologies.jsonld

@@ -2978,6 +2978,93 @@
             "title": "Fungal gross anatomy",
             "tracker": "https://github.com/obophenotype/fungal-anatomy-ontology/issues"
         },
+        {
+            "activity_status": "active",
+            "build": {
+                "checkout": "git clone https://github.com/foundingGIDE/fbbi.git",
+                "path": ".",
+                "system": "git"
+            },
+            "contact": {
+                "email": "damien@gerbi-gmb.de",
+                "github": "gouttegd",
+                "label": "Damien Goutte-Gattat",
+                "orcid": "0000-0002-6095-8718"
+            },
+            "dependencies": [
+                {
+                    "id": "iao"
+                },
+                {
+                    "id": "omo"
+                },
+                {
+                    "id": "ro"
+                }
+            ],
+            "description": "An ontology for the description of sample preparation, visualization, and imaging methods used in biomedical research.",
+            "domain": "investigations",
+            "homepage": "https://github.com/foundingGIDE/fbbi",
+            "id": "fbbi",
+            "layout": "ontology_detail",
+            "license": {
+                "label": "CC BY 4.0",
+                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
+                "url": "https://creativecommons.org/licenses/by/4.0/"
+            },
+            "ontology_purl": "http://purl.obolibrary.org/obo/fbbi.owl",
+            "preferredPrefix": "FBbi",
+            "products": [
+                {
+                    "id": "fbbi.owl",
+                    "ontology_purl": "http://purl.obolibrary.org/obo/fbbi.owl"
+                },
+                {
+                    "id": "fbbi.obo",
+                    "ontology_purl": "http://purl.obolibrary.org/obo/fbbi.obo"
+                },
+                {
+                    "id": "fbbi/fbbi-base.owl",
+                    "ontology_purl": "http://purl.obolibrary.org/obo/fbbi/fbbi-base.owl"
+                },
+                {
+                    "id": "fbbi/fbbi-base.obo",
+                    "ontology_purl": "http://purl.obolibrary.org/obo/fbbi/fbbi-base.obo"
+                }
+            ],
+            "repository": "https://github.com/foundingGIDE/fbbi",
+            "tags": [
+                "imaging experiments"
+            ],
+            "title": "Biological Imaging Methods Ontology",
+            "tracker": "https://github.com/foundingGIDE/fbbi/issues",
+            "usages": [
+                {
+                    "description": "FlyBase uses FBbi to annotate its image collection.",
+                    "examples": [
+                        {
+                            "description": "images annotated to \"scanning electron micrograph\"",
+                            "url": "https://flybase.org/cgi-bin/fbcvquery.pl?mode=subtreehits&cvterm=FBbi:00000257%3EFBim"
+                        }
+                    ],
+                    "user": "https://flybase.org"
+                },
+                {
+                    "description": "Virtual Fly Brain uses FBbi to annotate images.",
+                    "user": "https://virtualflybrain.org"
+                },
+                {
+                    "description": "The Cell Image Library uses FBbi to annotate images.",
+                    "examples": [
+                        {
+                            "description": "An image annotate with several terms from FBbi.",
+                            "url": "https://www.cellimagelibrary.org/images/13654"
+                        }
+                    ],
+                    "user": "https://www.cellimagelibrary.org"
+                }
+            ]
+        },
         {
             "activity_status": "active",
             "browsers": [
@@ -11808,43 +11895,6 @@
                 }
             ]
         },
-        {
-            "activity_status": "inactive",
-            "build": {
-                "method": "obo2owl",
-                "source_url": "https://raw.githubusercontent.com/dosumis/fbbi/master/src/ontology/fbbi.obo"
-            },
-            "contact": {
-                "email": "wawong@gmail.com",
-                "github": "wawong",
-                "label": "Willy Wong",
-                "orcid": "0000-0002-8841-5870"
-            },
-            "description": "A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.",
-            "domain": "investigations",
-            "homepage": "http://cellimagelibrary.org/",
-            "id": "fbbi",
-            "layout": "ontology_detail",
-            "license": {
-                "label": "CC BY 4.0",
-                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
-                "url": "https://creativecommons.org/licenses/by/4.0/"
-            },
-            "ontology_purl": "http://purl.obolibrary.org/obo/fbbi.owl",
-            "preferredPrefix": "FBbi",
-            "products": [
-                {
-                    "id": "fbbi.owl",
-                    "ontology_purl": "http://purl.obolibrary.org/obo/fbbi.owl"
-                }
-            ],
-            "repository": "https://github.com/CRBS/Biological_Imaging_Methods_Ontology",
-            "tags": [
-                "imaging experiments"
-            ],
-            "title": "Biological Imaging Methods Ontology",
-            "tracker": "https://github.com/CRBS/Biological_Imaging_Methods_Ontology/issues"
-        },
         {
             "activity_status": "inactive",
             "contact": {