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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 960 463

  2. Vocabulary-v5.0 Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 242 75

  3. Atlas Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 283 143

  4. Cyclops Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 40 33

  5. CohortMethod CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 85 63

  6. PatientLevelPrediction PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    R 196 90

Repositories

Showing 10 of 331 repositories
  • d2e Public

    Data2Evidence is an end-to-end solution for management of OMOP data - https://data2evidence.org

    OHDSI/d2e’s past year of commit activity
    TypeScript 17 Apache-2.0 0 0 13 Updated May 28, 2025
  • PhenotypeR Public
    OHDSI/PhenotypeR’s past year of commit activity
    R 3 Apache-2.0 1 34 1 Updated May 27, 2025
  • Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    OHDSI/Vocabulary-v5.0’s past year of commit activity
    PLpgSQL 242 Unlicense 75 220 11 Updated May 27, 2025
  • Andromeda Public

    AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.

    OHDSI/Andromeda’s past year of commit activity
    R 11 12 18 0 Updated May 27, 2025
  • CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    OHDSI/CohortMethod’s past year of commit activity
    R 85 63 24 (2 issues need help) 1 Updated May 27, 2025
  • CohortDiagnostics Public

    An R package for performing various cohort diagnostics.

    OHDSI/CohortDiagnostics’s past year of commit activity
    R 45 52 33 (1 issue needs help) 3 Updated May 26, 2025
  • DeepPatientLevelPrediction Public

    An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.

    OHDSI/DeepPatientLevelPrediction’s past year of commit activity
    R 13 4 27 (2 issues need help) 2 Updated May 26, 2025
  • BookOfOhdsi-2ndEdition Public

    This repository contains the 2nd edition of the Book

    OHDSI/BookOfOhdsi-2ndEdition’s past year of commit activity
    TeX 0 Apache-2.0 0 39 0 Updated May 25, 2025
  • dbt-synthea Public

    [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM

    OHDSI/dbt-synthea’s past year of commit activity
    Python 29 Apache-2.0 9 25 5 Updated May 25, 2025
  • CohortGenerator Public

    Cohort Generation for the OMOP Common Data Model

    OHDSI/CohortGenerator’s past year of commit activity
    R 14 12 23 (1 issue needs help) 5 Updated May 23, 2025
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