Initial commit

Author: kzollove

.Rbuildignore

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+^_pkgdown\.yml$
+^docs$
+^pkgdown$

.github/workflows/create_release.yml

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+name: Create release
+
+on:
+  push:
+    tags:
+      - v*
+
+permissions:
+  contents: write
+
+jobs:
+  release:
+    name: Release pushed tag
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Create release
+        env:
+          GITHUB_TOKEN: ${{ secrets.RELEASE_TOKEN }}
+          tag: ${{ github.ref_name }}
+        run: |
+          gh release create "$tag" \
+              --repo="$GITHUB_REPOSITORY" \
+              --title="${GITHUB_REPOSITORY#*/} ${tag#v}" \
+              --generate-notes

.github/workflows/pkgdown.yml

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+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown.yaml
+
+permissions: read-all
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/github-pages-deploy-action@v4.5.0
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.gitignore

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+docs

DESCRIPTION

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+Package: gaiaCore
+Title: Functions for interacting with gaiaDB and the OHDSI GIS Gaia toolchain
+Version: 0.1.0
+Authors@R: 
+    c(person("Kyle", "Zollo-Venecek", , "kzollovenecek@tuftsmedicalcenter.org", role = c("aut", "cre"),
+           comment = c(ORCID = "0000-0002-1615-590X")),
+    person("Robert", "Miller", , "rmiller@minderoo.org", role = c("aut"),
+           comment = c(ORCID = "0000-0002-1787-2855")))
+Description: What the package does (one paragraph).
+License: Apache License (>= 2)
+Encoding: UTF-8
+Roxygen: list(markdown = TRUE)
+RoxygenNote: 7.3.2
+Depends: 
+    R (>= 2.10)
+LazyData: true
+Suggests: 
+    knitr,
+    testthat (>= 3.0.0),
+    rmarkdown
+VignetteBuilder: knitr
+Imports: 
+    DatabaseConnector,
+    dplyr,
+    magrittr,
+    plyr,
+    rjson,
+    rpostgis,
+    RPostgreSQL,
+    sf,
+    stringr,
+    utils,
+    yaml
+Config/testthat/edition: 3

LICENSE.md

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+Apache License
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NAMESPACE

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+# Generated by roxygen2: do not edit by hand
+
+export("%>%")
+export(checkTableExists)
+export(checkVariableExists)
+export(createDdl)
+export(createExposure)
+export(createForeignKeys)
+export(createIndices)
+export(createOccurrenceDdl)
+export(createOccurrenceForeignKeys)
+export(createOccurrencePrimaryKeys)
+export(createPrimaryKeys)
+export(geocodeAddresses)
+export(getAttrIndexRecord)
+export(getAttrIndexTable)
+export(getAttrNameFromVariableSourceId)
+export(getCohortAddresses)
+export(getDataSourceTable)
+export(getGeomIndexTable)
+export(getGeomNameFromVariableSourceId)
+export(getLocationAddresses)
+export(getVariableSourceRecord)
+export(getVariableSourceSummaryTable)
+export(getVariableSourceTable)
+export(importCohortTable)
+export(importLocationTable)
+export(initializeDatabase)
+export(loadGeometry)
+export(loadVariable)
+export(splitAddresses)
+export(writeDdl)
+export(writeForeignKeys)
+export(writeOccurrenceDdl)
+export(writeOccurrenceForeignKeys)
+export(writeOccurrenceIndex)
+export(writeOccurrencePrimaryKeys)
+export(writePrimaryKeys)
+importFrom(magrittr,"%>%")
+importFrom(utils,read.csv)

NEWS.md

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+# gaiaCore Development Version 0.1.0
+
+The initial development version of gaiaCore starts with the version of the gaiaCore R Package that was presented at the 2024 Global OHDSI Symposium ([this commit](https://github.com/OHDSI/GIS/commit/601a1245fb33647c8b5b8101278edec8dcce5323)).