Add CASSIA (Nature Communications 2025) to Cell Type Annotation#28
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ElliotXie wants to merge 3 commits into
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Add CASSIA (Nature Communications 2025) to Cell Type Annotation#28ElliotXie wants to merge 3 commits into
ElliotXie wants to merge 3 commits into
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CASSIA is now peer-reviewed (Nat Commun 2025, Xie et al.); cite the published paper instead of the bioRxiv preprint and fix the venue tag. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
ElliotXie
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Adds CASSIA to the Cell Type Annotation section, citing the peer-reviewed Nature Communications (2025) paper.
Note: CASSIA was listed here previously but is not in the current README (the list appears to be auto-regenerated and the entry was dropped), so this re-adds it with the published citation rather than the bioRxiv preprint. Clean single-entry addition (1 file).
CASSIA is a multi-agent large language model for automated, reference-free, and interpretable cell-type annotation of single-cell RNA-seq data. Paper: https://www.nature.com/articles/s41467-025-67084-x · Code: https://github.com/ElliotXie/CASSIA (MIT).