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Fix forward/reverse convergence analysis: slice by time, not by replica#2059

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aqemia-benedict-tan wants to merge 20 commits into
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aqemia-benedict-tan:fix/convergence
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Fix forward/reverse convergence analysis: slice by time, not by replica#2059
aqemia-benedict-tan wants to merge 20 commits into
OpenFreeEnergy:mainfrom
aqemia-benedict-tan:fix/convergence

lint with ruff

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