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Pull requests: OpenGene/fastp

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Pull requests list

Fix writer drain deadlock
#696 opened May 18, 2026 by KimYannn Member Loading…
1
fix+perf: eliminate data races & replace all synchronization with Highway futex (zero mutex, wall -7%, sys -51%)
#684 opened Apr 17, 2026 by KimYannn Member Loading…
2
add end-to-end benchmark suite
#677 opened Mar 31, 2026 by KimYannn Member Loading…
4 tasks
perf: parallel pread for SE/PE uncompressed FASTQ input
#674 opened Mar 27, 2026 by KimYannn Member Loading…
6 tasks done
perf: optimize FASTQ reader with memchr, skipLine, and readExact
#671 opened Mar 21, 2026 by KimYannn Member Loading…
2 of 3 tasks
Enable zstd compression format
#640 opened Nov 19, 2025 by GilbertHan1011 Loading…
11
Makefile: Respect build environment, add destdir support
#619 opened Jun 21, 2025 by outpaddling Loading…
1
Use EX_USAGE for missing arguments in main()
#615 opened Jun 17, 2025 by hayzamjs Loading…
feat: sets trim-poly-G as True for one-color-system too (iSeq 100)
#598 opened Feb 20, 2025 by Coppini Loading…
2
Added a new function(umi_skipb) to the program to skip the specified bp number before trim the UMI sequence.
#550 opened Mar 8, 2024 by biolxy Loading…
cuting doesn't interfere with deduplication
#545 opened Feb 9, 2024 by SilasK Loading…
check read errors in fastqreader
#533 opened Nov 15, 2023 by jchorl Loading…
Add a Docker container
#527 opened Oct 11, 2023 by maol-corteva Loading…
3
fix average q-score calculation
#495 opened May 31, 2023 by DrinnanSante Loading…
2
Add args for adjusting mismatch number
#311 opened Jan 4, 2021 by y9c Contributor Loading…
1
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