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Add support for Cellranger 10#20

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skchronicles merged 7 commits intomainfrom
cellranger10
Dec 18, 2025
Merged

Add support for Cellranger 10#20
skchronicles merged 7 commits intomainfrom
cellranger10

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@chenv3
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@chenv3 chenv3 commented Dec 17, 2025

This pull request adds support for Cell Ranger 10 for the GEX, CITE, VDJ, and MULTI pipelines. It allows 10.0.0 as another valid option for the cellranger flag.

Also fixing a few bugs causing errors when using the rename option and edge cases for silhouette scores.

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This looks great! Before we merge everything, can you update the VERISON file to 3.2.0?

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chenv3 commented Dec 18, 2025

Took a few more commits than probably necessary, but it should be 3.2.0 now

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Thank you for adding support for cellranger/10.0

@skchronicles skchronicles merged commit 3b03036 into main Dec 18, 2025
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@chenv3 chenv3 deleted the cellranger10 branch December 24, 2025 19:52
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2 participants