General plug-and-play inference library for Recursive Language Models (RLMs), supporting various sandboxes.

Codebase for BioPathNet to predict links in biomedical knowledge graphs

Multi-platform SDK for integrating GitHub Copilot Agent into apps and services

Eigent: The Open Source Cowork Desktop to Unlock Your Exceptional Productivity.

DORA (Draft Outline Research Assistant) is an advanced AI-driven tool designed to streamline the process of drafting academic papers and other related documents.

Integration of gut cell atlases

A set of ready to use scientific skills for Claude

PK-Sim® is a comprehensive software tool for whole-body physiologically based pharmacokinetic modeling

A collection of useful CloudFormation templates

GWAS Tutorial for Beginners

Local Dev of OrganoID

3D segmentation for cells and organoids of 3D multichannel images

A method to map new scRNA-seq data to HEOCA

Scripts and resource for the manuscript titled as Recent evolution of the developing human intestine impacts metabolic and barrier functions

Software for processing, recording, and visualizing multichannel electrophysiology data

Browser-based NWB visualization and DANDI exploration

Exploring Spatiotemporal Metabolic Dynamics in Mucosal Microbial Communities

A Python package for the simulation of organoids for the purpose of studying Organoid Intelligence (OI) and Organoid Learning (OL).

American Gut open-access data and IPython notebooks