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parabricks

William Rowell edited this page May 8, 2026 · 1 revision

Parabricks

Parabricks DeepVariant subworkflow

If both use_parabricks_deepvariant and use_gpu are set to true, Parabricks DeepVariant will be used instead of standard DeepVariant. We have tested this on HPC and AWS backends with NVIDIA GPUs. The Parabricks DeepVariant implementation requires 4 GPUs with ≥16GB memory (e.g. NVIDIA V100 or A100). The parabricks_deepvariant task will run on 4GPU/48CPU/192GiB.

PacBio WGS Variant Pipeline

Readme

Workflows

Subworkflows

Reference Inputs and Dependencies

Backends

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