Enable hint file, run the benchmark once per line in the hint file #11
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| name: HDF5 and MPICH | |
| on: | |
| push: | |
| branches: [ master ] | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.jpg' | |
| - '**/*.png' | |
| - 'tests/*' | |
| pull_request: | |
| branches: [ master ] | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.jpg' | |
| - '**/*.png' | |
| - 'tests/*' | |
| env: | |
| MPICH_VERSION: 4.3.0 | |
| HDF5_VERSION: 1.14.6 | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up dependencies | |
| run: | | |
| set -x | |
| sudo apt-get update | |
| sudo apt-get -y install automake autoconf libtool libtool-bin m4 cmake | |
| # The MPICH installed on github actions is too slow | |
| # sudo apt-get install mpich | |
| # mpicc -v | |
| # zlib | |
| sudo apt-get -y install zlib1g-dev | |
| - name: Add global env variables into GITHUB_ENV | |
| run: | | |
| set -x | |
| echo "MPICH_DIR=${GITHUB_WORKSPACE}/MPICH" >> $GITHUB_ENV | |
| echo "HDF5_ROOT=${GITHUB_WORKSPACE}/HDF5" >> $GITHUB_ENV | |
| - name: Build MPICH ${{ env.MPICH_VERSION }} | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf ${MPICH_DIR} ; mkdir ${MPICH_DIR} ; cd ${MPICH_DIR} | |
| curl -LO https://www.mpich.org/static/downloads/${MPICH_VERSION}/mpich-${MPICH_VERSION}.tar.gz | |
| gzip -dc mpich-${MPICH_VERSION}.tar.gz | tar -xf - | |
| cd mpich-${MPICH_VERSION} | |
| ./configure --prefix=${MPICH_DIR} \ | |
| --silent \ | |
| --enable-romio \ | |
| --with-file-system=ufs \ | |
| --with-device=ch3:sock \ | |
| --disable-fortran \ | |
| CC=gcc | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1 | |
| make -s -j 8 distclean >> qout 2>&1 | |
| - name: Dump MPICH log file | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cat ${MPICH_DIR}/mpich-${MPICH_VERSION}/qout | |
| cat ${MPICH_DIR}/mpich-${MPICH_VERSION}/config.log | |
| - name: Install HDF5 ${{ env.HDF5_VERSION }} | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf ${HDF5_ROOT} ; mkdir ${HDF5_ROOT} ; cd ${HDF5_ROOT} | |
| VER_MAJOR=${HDF5_VERSION%.*} | |
| VER_MAJOR=${VER_MAJOR/./_} # replace . with _ | |
| VER_NOPATCH=${HDF5_VERSION%-*} # remove patch version | |
| VER_NOPATCH=${VER_NOPATCH//./_} | |
| # curl -LO https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${VER_MAJOR}/hdf5-${VER_NOPATCH}/src/hdf5-${HDF5_VERSION}.tar.gz | |
| curl -LO https://support.hdfgroup.org/releases/hdf5/v${VER_MAJOR}/v${VER_NOPATCH}/downloads/hdf5-${HDF5_VERSION}.tar.gz | |
| tar -zxf hdf5-${HDF5_VERSION}.tar.gz | |
| mkdir build | |
| cd build | |
| CC=${MPICH_DIR}/bin/mpicc cmake ../hdf5-${HDF5_VERSION} \ | |
| -D"CMAKE_INSTALL_PREFIX=${HDF5_ROOT}" \ | |
| -D"HDF5_ENABLE_PARALLEL=ON" | |
| make -j 8 install > qout 2>&1 | |
| - name: Dump config.log file if build HDF5 failed | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| cat ${HDF5_ROOT}/hdf5-${HDF5_VERSION}/qout | |
| cat ${HDF5_ROOT}/hdf5-${HDF5_VERSION}/config.log | |
| - name: Build E3SM_IO with HDF5 | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf ./test_output | |
| autoreconf -i | |
| ./configure --with-mpi=${MPICH_DIR} \ | |
| --with-hdf5=${HDF5_ROOT} \ | |
| CFLAGS=-fno-var-tracking-assignments \ | |
| CXXFLAGS=-fno-var-tracking-assignments | |
| make -j 8 | |
| - name: Print config.log if error | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cat ${GITHUB_WORKSPACE}/config.log | |
| - name: Test - make check | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| make -s check | |
| - name: Print log files | |
| if: ${{ always() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| cat test.sh.log | |
| cat utils/*.log | |
| - name: Test - make ptest | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| make -s ptest | |
| - name: Print log files | |
| if: ${{ always() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| cat test.sh.log | |
| cat utils/*.log | |
| - name: make distclean | |
| if: ${{ always() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| make -s distclean | |