BasicPhylo is a tool that compares sample WGS data to a set of reference organisms(extracted from The new phylogeny of the genus Mycobacterium: The old and the news, Tortoli et al.).
This github has been equipped with an example sample (taken from: https://www.ncbi.nlm.nih.gov/biosample/SAMN08629045).
- Make sure the latest version of NextFlow is installed on your Ubuntu device.
- Download the main branch.
- In your terminal, move to the installed folder and enter; nextflow singlesample.nf -c conda.config