Name		Name	Last commit message	Last commit date
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context		context
regexp		regexp
rules		rules
README.md		README.md
used_resources.txt		used_resources.txt

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SDoHTransportation_NLP

A rule-based NLP algorithm to identify transportation needs from clinical notes using the OHNLP MedTagger framework.

Definition of Transportation Needs

Transportation Terms

Transportation Need Terms

transportation, ride, driv(e|ing)

work on, option(s), issue(s), due to, assist(ance)?, access, adequate, discuss(ed|es|ing), (un)?able, accommodation, support, agree(s)?, appl(y|ies), arrang(ed|es|ing)?, need(s), blam(e|sing)?, find(s|ing), connect(ing|ed)?, could(n't| not), did(n't|not), difficult(y|ies)?, get(ting)?, help, does(n't| not), lack(s|ing)?, easier, EMS, investigate, us(es|ing), depend(s|ing)?, organiz(es|ing), coordination, possible, resources, limit(s|ations)?, convenience, trouble(s)?, secur(e|es|ing), concern(s)?, regarding, reli(es|able|ant), time allowance, problem(s)?, challeng(es|ing), purpose(s)?, offer(s|ed), provid(es|ed|ing)

Getting Started with OHNLP Toolkit

Installation and Use of MedTagger

Video demo: https://vimeo.com/392331446

Download the latest release from https://github.com/OHNLP/MedTagger/releases
Extract the zip file
Modify the INPUTDIR, OUTPUTDIR, and RULEDIR variables in run_medtagger_win.bat or run_medtagger_unix_mac.sh, as appropriate
- INPUT_DIR: full directory path of input folder
- OUTPUT_DIR: full directory path of output folder
- RULES_DIR: full directory path of 'Rule' folder
Example for Mac:
```
INPUTDIR="$YOUR_INPUT_DIRECTORY"
OUTPUTDIR="$YOUR_OUTPUT_DIRECTORY"
RULEDIR="$YOUR_MEDTAGGER_HOME/medtaggerieresources/covid19"
```
Example for Windows:
```
INPUTDIR="C:\$YOUR_INPUT_DIRECTORY\input"
OUTPUTDIR="C:\$YOUR_OUTPUT_DIRECTORY\output"
RULEDIR="C:\YOUR_MEDTAGGER_HOME\medtaggerieresources\covid19"
```

Run the batch file

Mac/linux:

run_medtagger_unix_mac.sh

Windows:

run_medtagger_win.bat