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Plant-Food-Research-Open

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  1. assemblyqc assemblyqc Public

    A Nextflow pipeline for evaluating assembly quality

    Nextflow 33 7

  2. calisim calisim Public

    A toolbox for the calibration and evaluation of simulation models.

    Python 14 2

  3. genepal genepal Public

    A Nextflow pipeline for genome and pan-genome annotation

    Nextflow 12 7

  4. moiraine moiraine Public

    An R package to construct Multi-Omics Integration Reproducible Analyses in R.

    R 6 1

  5. FieldNBalance FieldNBalance Public

    Nitrogen balance model components and test procedures

    Jupyter Notebook 2 4

  6. TEgenomeSimulator TEgenomeSimulator Public

    TEgenomeSimulator: A tool to simulate TE mutation and insertion into a random-synthesised or user-provided genome.

    Python 2 1

Repositories

Showing 9 of 9 repositories
  • genepal Public

    A Nextflow pipeline for genome and pan-genome annotation

    Plant-Food-Research-Open/genepal’s past year of commit activity
    Nextflow 12 MIT 7 31 1 Updated May 8, 2025
  • assemblyqc Public

    A Nextflow pipeline for evaluating assembly quality

    Plant-Food-Research-Open/assemblyqc’s past year of commit activity
    Nextflow 33 MIT 7 28 (1 issue needs help) 1 Updated May 6, 2025
  • TEgenomeSimulator Public

    TEgenomeSimulator: A tool to simulate TE mutation and insertion into a random-synthesised or user-provided genome.

    Plant-Food-Research-Open/TEgenomeSimulator’s past year of commit activity
    Python 2 GPL-3.0 1 0 0 Updated May 2, 2025
  • calisim Public

    A toolbox for the calibration and evaluation of simulation models.

    Plant-Food-Research-Open/calisim’s past year of commit activity
    Python 14 Apache-2.0 2 10 (1 issue needs help) 5 Updated May 1, 2025
  • moiraine_publication_code Public

    Code to reproduce the results presented in Angelin-Bonnet et al, 2025 "moiraine: an R package to construct reproducible pipelines for the application and comparison of multi-omics integration methods".

    Plant-Food-Research-Open/moiraine_publication_code’s past year of commit activity
    R 0 MIT 0 0 0 Updated Apr 9, 2025
  • moiraine Public

    An R package to construct Multi-Omics Integration Reproducible Analyses in R.

    Plant-Food-Research-Open/moiraine’s past year of commit activity
    R 6 1 0 0 Updated Jan 22, 2025
  • moiraine-manual Public

    User manual for the moiraine R package

    Plant-Food-Research-Open/moiraine-manual’s past year of commit activity
    R 0 MIT 0 0 0 Updated Aug 11, 2024
  • FieldNBalance Public

    Nitrogen balance model components and test procedures

    Plant-Food-Research-Open/FieldNBalance’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 4 2 (1 issue needs help) 0 Updated Jul 16, 2024
  • HEImiRA-pipeline Public

    Host Environment Intersection miRNA Annotation pipeline

    Plant-Food-Research-Open/HEImiRA-pipeline’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Jun 19, 2023

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