Enquiry: Kraken2 result. Pear sequences tagged as apple #169
Description
Description of the bug
I used the assemblyQC to check the quality of transcripts in several published Pear genomes. The BUSCO completeness scores look good (>95% complete completeness). In the Kraken result, all the pear transcripts were classified as apple. For example, BartDHv2 was classified 100% Malus, broken down to 41% M. domestica, 49% M. sylvestris. The remaining 10% was not labeled and the color looks like Malus. Why were the 10% transcripts not labelled to species level? And why the whole transcriptome was classified as apple, not pear (Pyrus)? Was Pyrus not included in the Kraken2 DB? Thank you.
Command used and terminal output
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System information
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