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@jfennick jfennick mentioned this pull request Jan 12, 2024
@ndonyapour ndonyapour force-pushed the onionnet_v1 branch 2 times, most recently from 896ff86 to 0c2182c Compare January 18, 2024 19:54
in:
xs: '*exp_dGs'
ys: '*onionnet_score'
# Use massive tolerances because the re-docking performance of classical scoring functions (Vina) are unreliable.
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# Use massive tolerances because the re-docking performance of classical scoring functions (Vina) are unreliable.

One of the main points of using a machine learning scoring function (like OnionNet v1 or v2) is that, unlike classical scoring functions, they should in fact be much smoother and much less sensitive to the exact coordinates. Please test this by running this workflow at scale and attempting to use much narrower tolerances.

@ndonyapour ndonyapour force-pushed the onionnet_v1 branch 5 times, most recently from addff3e to 4c2937e Compare March 28, 2024 20:17
@ndonyapour ndonyapour force-pushed the onionnet_v1 branch 2 times, most recently from b56a8ed to 7e24a8e Compare October 21, 2024 19:32
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3 participants