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Beat nnU-Net #168

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@ATATC ATATC commented Dec 20, 2025

See #133.

ATATC added 12 commits December 17, 2025 12:17
@ATATC
Added a benchmarking script for MIP Candy. (#133)
88401f8
@ATATC
Set trainer.num_dims to 3 in benchmarking script. (#133)
aa54285
@ATATC
Refactored UNetTrainer into a separate module and adjusted `DataLoa…
e1dc242 
…der` batch sizes in benchmarking script. (#133)
@ATATC
Merge branch 'main' into 133
e04ea2f
@ATATC
Refactored sanity check by introducing get_example_input() method. (#…
9fb8e57 
…133)
@ATATC
Refactored UNetTrainer to use SlidingSegmentationTrainer with sli…
853b61d 
…ding window support. (#133)
@ATATC
Refactored sanity check by introducing get_example_input() method. (#…
3dcaf12 
…165)
@ATATC
Fixed device handling in get_example_input() and updated `SlidingTr…
4b802a2 
…ainer` to override the method. (#165)
@ATATC
Refined input handling in get_example_input() and adjusted `Sliding…
706b869 
…Trainer` implementation. (#165)
@ATATC
Merge branch '165' into 133
81dc454 
# Conflicts:
#	mipcandy/training.py
@ATATC
Merge branch 'main' into 133
9ffddfc
@ATATC
Refactored sliding window operations to improve batch processing and …
ed336cb 
…updated `get_batch_size()` handling across trainers. (#133)
@ATATC ATATC added this to the 1.1.x milestone Dec 20, 2025
@ATATC ATATC requested a review from perctrix December 20, 2025 05:10
@ATATC ATATC self-assigned this Dec 20, 2025
@ATATC ATATC added documentation Improvements or additions to documentation enhancement New feature or request labels Dec 20, 2025
@ATATC ATATC linked an issue Dec 20, 2025 that may be closed by this pull request
Beat nnU-Net #133
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@ATATC ATATC added report Discussed in the meeting todo New task or assignment labels Dec 20, 2025
ATATC added 6 commits December 20, 2025 00:15
@ATATC
Set num_classes to 4 in UNetTrainer. (#133)
7776cb8
@ATATC
Updated backward() and backward_windowed() methods in `Segmentati…
37319b9 
…onTrainer` to optimize loss computation and simplify overrides. (#133)
@ATATC
Replaced SlidingSegmentationTrainer with SegmentationTrainer in `…
79a04c6 
…UNetTrainer` and added `DiceBCELossWithLogits` as the loss criterion. (#133)
@ATATC
Added image and label resizing transforms to NNUNetDataset and upda…
a8f2515 
…ted `num_classes` in `UNetTrainer` to 5. (#133)
@ATATC
Added customizable benchmark functions (full_volume, resize128, `…
0e6c385 
…resize256`, `roi`) and introduced `UNetSlidingTrainer` for sliding window training. (#133)
@ATATC
Renamed full_volume() to full() in benchmark.py for concise fun…
f1752f0 
…ction naming. (#133)
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Beat nnU-Net

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