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MSA documentation out of data with MSA features

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Bug

#453 In ProteinGym/proteingym-base;

· karel-w opened on Apr 7, 2026

Different length weights / msa

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

#452 In ProteinGym/proteingym-base;

· hredestig opened on Mar 31, 2026

Bug: (refine) reference_sequence StopIteration

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

#451 In ProteinGym/proteingym-base;

· hredestig opened on Mar 31, 2026

How to handle indels?

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

#450 In ProteinGym/proteingym-base;

· hredestig opened on Mar 31, 2026

Make structures available as raw mmCIF string

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#449 In ProteinGym/proteingym-base;

· hredestig opened on Mar 31, 2026

Reference sequence relevant region

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#448 In ProteinGym/proteingym-base;

· hredestig opened on Mar 31, 2026

Add structure dumping method to Subsets/Dataset class

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#446 In ProteinGym/proteingym-base;

· florisvdf opened on Mar 27, 2026

Download protein structures from PDB

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#441 In ProteinGym/proteingym-base;

· karel-w opened on Feb 3, 2026

ABC the splitting classes

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#429 In ProteinGym/proteingym-base;

· karel-w opened on Dec 18, 2025

Revisit ipynb 02 to be reflective off the current state

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#428 In ProteinGym/proteingym-base;

· karel-w opened on Dec 15, 2025

Stratify splits on targets

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#403 In ProteinGym/proteingym-base;

· hredestig opened on Dec 3, 2025

Support units better than simple strings

Status: Open.

Feature

#375 In ProteinGym/proteingym-base;

· hredestig opened on Nov 17, 2025