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Deduplicate dataset #59

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Merged
tintinrevient merged 2 commits into from
Jul 23, 2025
Merged

Deduplicate dataset #59

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1bf08b0
Deduplicate dataset
tintinrevient Jul 16, 2025
8f7d284
Deduplicate in sequences in-place
tintinrevient Jul 23, 2025
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4 changes: 4 additions & 0 deletions src/pg2_benchmark/dummy_data.py
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Expand Up @@ -113,6 +113,10 @@ def charge_ladder_dataset(n_rows: int = 200, seq_len: int = 20) -> pd.DataFrame:
sequences = [
charge_mutations(parent, random.randint(0, seq_len)) for _ in range(n_rows)
]

# Deduplicate sequences
sequences = list(set(sequences))

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charge = [peptide_charge(seq) for seq in sequences]
return pd.DataFrame({"sequence": sequences, "charge": charge})

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