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Add 27 test files for utility/data functions, coverage 41% -> ~55% #8

Add 27 test files for utility/data functions, coverage 41% -> ~55%

Add 27 test files for utility/data functions, coverage 41% -> ~55% #8

Triggered via push March 15, 2026 05:21
Status Failure
Total duration 16m 24s
Artifacts 3

rworkflows.yml

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33 errors and 20 warnings
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Process completed with exit code 1.
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'list_finemap_methods' is not an exported object from 'namespace:echofinemap'
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R CMD check found ERRORs
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[Workflow Telemetry] AxiosError
windows-latest (auto)
[Workflow Telemetry] getLineGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Network I/O Read (MB)"},"timeTicks":{"unit":"auto"}},"lines":[{"label":"Read","color":"#be4d25","points":[{"x":1773552078666,"y":0},{"x":1773552083662,"y":0},{"x":1773552088653,"y":84},{"x":1773552093648,"y":0},{"x":1773552098649,"y":0},{"x":1773552103652,"y":0},{"x":1773552108649,"y":0},{"x":1773552113649,"y":0},{"x":1773552118650,"y":0},{"x":1773552123649,"y":0},{"x":1773552128660,"y":0},{"x":1773552133648,"y":0},{"x":1773552138651,"y":0},{"x":1773552143648,"y":0},{"x":1773552148647,"y":0},{"x":1773552153657,"y":0},{"x":1773552158649,"y":0},{"x":1773552163662,"y":48},{"x":1773552168655,"y":0},{"x":1773552173649,"y":0},{"x":1773552178651,"y":42},{"x":1773552183649,"y":0},{"x":1773552188652,"y":4},{"x":1773552193648,"y":23},{"x":1773552198655,"y":4},{"x":1773552203650,"y":0},{"x":1773552208663,"y":0},{"x":1773552213650,"y":13},{"x":1773552218648,"y":373},{"x":1773552223663,"y":0},{"x":1773552228662,"y":0},{"x":1773552233649,"y":0},{"x":1773552238663,"y":0},{"x":1773552243660,"y":0},{"x":1773552248648,"y":0},{"x":1773552253664,"y":0},{"x":1773552258648,"y":0},{"x":1773552263649,"y":0},{"x":1773552268651,"y":0},{"x":1773552273651,"y":0},{"x":1773552278651,"y":0},{"x":1773552283651,"y":0},{"x":1773552288651,"y":0},{"x":1773552293650,"y":0},{"x":1773552298649,"y":0},{"x":1773552303651,"y":0},{"x":1773552308648,"y":0},{"x":1773552313649,"y":0},{"x":1773552318664,"y":0},{"x":1773552323647,"y":0},{"x":1773552328664,"y":0},{"x":1773552333663,"y":0},{"x":1773552338660,"y":0},{"x":1773552343657,"y":0},{"x":1773552348654,"y":0},{"x":1773552353657,"y":0},{"x":1773552358656,"y":0},{"x":1773552363660,"y":0},{"x":1773552368652,"y":0},{"x":1773552373661,"y":2},{"x":1773552378649,"y":3},{"x":1773552383653,"y":0},{"x":1773552388648,"y":0},{"x":1773552393649,"y":0},{"x":1773552398649,"y":0},{"x":1773552403663,"y":0},{"x":1773552408659,"y":0},{"x":1773552413648,"y":0},{"x":1773552418657,"y":0},{"x":1773552423648,"y":0},{"x":1773552428657,"y":0},{"x":1773552433648,"y":0},{"x":1773552438651,"y":0},{"x":1773552443663,"y":0},{"x":1773552448649,"y":0},{"x":1773552453650,"y":0},{"x":1773552458649,"y":0},{"x":1773552463649,"y":0},{"x":1773552468661,"y":2},{"x":1773552473647,"y":0},{"x":1773552478648,"y":0},{"x":1773552483648,"y":0},{"x":1773552488649,"y":0},{"x":1773552493648,"y":0},{"x":1773552498660,"y":0},{"x":1773552503649,"y":0},{"x":1773552508652,"y":0},{"x":1773552513654,"y":0},{"x":1773552518659,"y":0},{"x":1773552523657,"y":0},{"x":1773552528649,"y":0},{"x":1773552533649,"y":0},{"x":1773552538650,"y":0},{"x":1773552543652,"y":0},{"x":1773552548657,"y":0},{"x":1773552553650,"y":0},{"x":1773552558649,"y":0},{"x":1773552563647,"y":0},{"x":1773552568654,"y":0},{"x":1773552573658,"y":0},{"x":1773552578649,"y":0},{"x":1773552583648,"y":0},{"x":1773552588648,"y":0},{"x":1773552593651,"y":0},{"x":1773552598651,"y":0},{"x":1773552603664,"y":0},{"x":1773552608664,"y":0},{"x":1773552613650,"y":0},{"x":1773552618649,"y":0},{"x":1773552623652,"y":0},{"x":1773552628652,"y":0},{"x":1773552633648,"y":0},{"x":1773552638670,"y":0},{"x":1773552643654,"y":0},{"x":1773552648654,"y":0},{"x":1773552653668,"y":0},{"x":1773552658649,"y":0},{"x":1773552663649,"y":0},{"x":1773552668659,"y":0},{"x":1773552673659,"y":0},{"x":1773552678661,"y":0},{"x":1773552683651,"y":0},{"x":1773552688648,"y":0},{"x":1773552693648,"y":0},{"x":1773552698647,"y":0},{"x":1773552703650,"y":0},{"x":1773552708650,"y":0},{"x":1773552713663,"y":0},{"x":1773552718657,"y":0},{"x":1773552723648,"y":0},{"x":1773552728647,"y":0},{"x":1773552733648,"y":0},{"x":1773552738650,"y":0},{"x":1773552743649,"y":0},{"x":1773552748650,"y":0},{"x":1773552753650,"y":0},{"x":1773552758661,"y":0},{"x":1773552763647,"y":0},{"x":1773552768654,"y":0},{"x":1773552773649,"y":0},{"x":1773552778651,"y":0},{"x":1773552783648,"y":0},{"x":1773552788652,"y":0},{"x":1773552793649,"y":0},{"x":1773552798648,"y":0},{"x":1773552803656,"y":0},{"x":1773552808657,"y":0},{"x":1773552813649,"y":0},{"x":1773552818655,"
windows-latest (auto)
AxiosError: Request failed with status code 403
windows-latest (auto)
[Workflow Telemetry] AxiosError
windows-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Memory Usage (MB)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"Used","color":"#377eb899","points":[{"x":1773552078666,"y":2776.43359375},{"x":1773552083662,"y":2806.6640625},{"x":1773552088653,"y":2820.05859375},{"x":1773552093648,"y":2939.05859375},{"x":1773552098649,"y":2990.984375},{"x":1773552103652,"y":2964.515625},{"x":1773552108649,"y":2893.30078125},{"x":1773552113649,"y":2922.6796875},{"x":1773552118650,"y":2920.171875},{"x":1773552123649,"y":2883.58203125},{"x":1773552128660,"y":2875.9765625},{"x":1773552133648,"y":2880.4453125},{"x":1773552138651,"y":2871.2578125},{"x":1773552143648,"y":2873.6875},{"x":1773552148647,"y":2893.95703125},{"x":1773552153657,"y":2912.73046875},{"x":1773552158649,"y":2918.796875},{"x":1773552163662,"y":2901.56640625},{"x":1773552168655,"y":2969.3359375},{"x":1773552173649,"y":2958.2734375},{"x":1773552178651,"y":2950.44921875},{"x":1773552183649,"y":3112.984375},{"x":1773552188652,"y":2967.16015625},{"x":1773552193648,"y":3008.48046875},{"x":1773552198655,"y":3122.18359375},{"x":1773552203650,"y":3074.8046875},{"x":1773552208663,"y":3153.36328125},{"x":1773552213650,"y":3039.265625},{"x":1773552218648,"y":3022.97265625},{"x":1773552223663,"y":2946.2109375},{"x":1773552228662,"y":2957.53125},{"x":1773552233649,"y":2964.91015625},{"x":1773552238663,"y":2985.79296875},{"x":1773552243660,"y":2983.37890625},{"x":1773552248648,"y":3003.3828125},{"x":1773552253664,"y":3009.59765625},{"x":1773552258648,"y":3017.79296875},{"x":1773552263649,"y":3015.39453125},{"x":1773552268651,"y":3017.2734375},{"x":1773552273651,"y":3029.515625},{"x":1773552278651,"y":3033.00390625},{"x":1773552283651,"y":3031.68359375},{"x":1773552288651,"y":3041.26171875},{"x":1773552293650,"y":3051.13671875},{"x":1773552298649,"y":3049.66796875},{"x":1773552303651,"y":3050.640625},{"x":1773552308648,"y":3055.86328125},{"x":1773552313649,"y":3050.76171875},{"x":1773552318664,"y":3066.02734375},{"x":1773552323647,"y":3072.89453125},{"x":1773552328664,"y":3077.40625},{"x":1773552333663,"y":3132.3828125},{"x":1773552338660,"y":3171.9296875},{"x":1773552343657,"y":3177.703125},{"x":1773552348654,"y":3134.75390625},{"x":1773552353657,"y":3146.1171875},{"x":1773552358656,"y":3349.84375},{"x":1773552363660,"y":3296.69921875},{"x":1773552368652,"y":3264.12890625},{"x":1773552373661,"y":3206.90234375},{"x":1773552378649,"y":3397.28515625},{"x":1773552383653,"y":3296.36328125},{"x":1773552388648,"y":3302.09375},{"x":1773552393649,"y":3218.12890625},{"x":1773552398649,"y":3594.98046875},{"x":1773552403663,"y":3913.24609375},{"x":1773552408659,"y":4426.01953125},{"x":1773552413648,"y":4880.1796875},{"x":1773552418657,"y":3817.53125},{"x":1773552423648,"y":4080.66015625},{"x":1773552428657,"y":4278.45703125},{"x":1773552433648,"y":3552.61328125},{"x":1773552438651,"y":3956.73828125},{"x":1773552443663,"y":4135.796875},{"x":1773552448649,"y":4495.359375},{"x":1773552453650,"y":3521.125},{"x":1773552458649,"y":3865.15234375},{"x":1773552463649,"y":4185.6171875},{"x":1773552468661,"y":3203.2421875},{"x":1773552473647,"y":3410.00390625},{"x":1773552478648,"y":3791.51953125},{"x":1773552483648,"y":4178.70703125},{"x":1773552488649,"y":4577.6796875},{"x":1773552493648,"y":3348.84765625},{"x":1773552498660,"y":3857.01953125},{"x":1773552503649,"y":4103.20703125},{"x":1773552508652,"y":4521.2109375},{"x":1773552513654,"y":3614},{"x":1773552518659,"y":3955.6875},{"x":1773552523657,"y":4197.91015625},{"x":1773552528649,"y":3244.42578125},{"x":1773552533649,"y":3521.1171875},{"x":1773552538650,"y":3883.30859375},{"x":1773552543652,"y":4120.3125},{"x":1773552548657,"y":3502.4921875},{"x":1773552553650,"y":3873.03515625},{"x":1773552558649,"y":4135.41015625},{"x":1773552563647,"y":3300},{"x":1773552568654,"y":3503.37109375},{"x":1773552573658,"y":3795.1796875},{"x":1773552578649,"y":3172.0390625},{"x":1773552583648,"y":3475.30078125},{"x":1773552588648,"y":3790.17578125},{"x":1773552593651,"y":3047.64453125},{"x":17735525
windows-latest (auto)
AxiosError: Request failed with status code 403
windows-latest (auto)
[Workflow Telemetry] AxiosError
windows-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"CPU Load (%)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"User Load","color":"#e41a1c99","points":[{"x":1773552078666,"y":7.210353840033215},{"x":1773552083662,"y":28.840109753055625},{"x":1773552088653,"y":13.793275466427218},{"x":1773552093648,"y":14.455494778717057},{"x":1773552098649,"y":13.372150890813177},{"x":1773552103652,"y":12.863474745506794},{"x":1773552108649,"y":13.873006319590731},{"x":1773552113649,"y":5.444311615859733},{"x":1773552118650,"y":5.972518478099112},{"x":1773552123649,"y":17.284318102892296},{"x":1773552128660,"y":6.719157569316975},{"x":1773552133648,"y":6.903032457967187},{"x":1773552138651,"y":6.43480849374876},{"x":1773552143648,"y":6.14371914426769},{"x":1773552148647,"y":9.836599533141523},{"x":1773552153657,"y":20.618147541796894},{"x":1773552158649,"y":9.30244195356285},{"x":1773552163662,"y":16.221381196837413},{"x":1773552168655,"y":42.182084452038076},{"x":1773552173649,"y":40.51258992805755},{"x":1773552178651,"y":36.20808678500986},{"x":1773552183649,"y":38.96546685499976},{"x":1773552188652,"y":46.49061501597444},{"x":1773552193648,"y":44.281361097003554},{"x":1773552198655,"y":48.60484301450963},{"x":1773552203650,"y":44.26423035466817},{"x":1773552208663,"y":45.243077522020535},{"x":1773552213650,"y":43.41443592218215},{"x":1773552218648,"y":49.93123051531268},{"x":1773552223663,"y":27.24874845238736},{"x":1773552228662,"y":26.694556501817818},{"x":1773552233649,"y":25.69904799880377},{"x":1773552238663,"y":26.115466153922},{"x":1773552243660,"y":25.52758329609216},{"x":1773552248648,"y":25.09513219668891},{"x":1773552253664,"y":25.019892580067637},{"x":1773552258648,"y":26.39060874733766},{"x":1773552263649,"y":23.233033606269153},{"x":1773552268651,"y":23.16132858837485},{"x":1773552273651,"y":25.458360393665387},{"x":1773552278651,"y":24.057856932008264},{"x":1773552283651,"y":25.07576886769017},{"x":1773552288651,"y":23.138793526238352},{"x":1773552293650,"y":26.13347932115662},{"x":1773552298649,"y":26.18100447538538},{"x":1773552303651,"y":25.836914160087936},{"x":1773552308648,"y":25.52183567727609},{"x":1773552313649,"y":25.019766752322592},{"x":1773552318664,"y":25.73449401523395},{"x":1773552323647,"y":26.696877645535583},{"x":1773552328664,"y":24.958685963243028},{"x":1773552333663,"y":33.17440031458907},{"x":1773552338660,"y":27.563242383579343},{"x":1773552343657,"y":26.249688512334913},{"x":1773552348654,"y":27.222772277227726},{"x":1773552353657,"y":27.38235873203386},{"x":1773552358656,"y":33.489262173081016},{"x":1773552363660,"y":38.727386803304405},{"x":1773552368652,"y":27.565471507249633},{"x":1773552373661,"y":33.017871089263565},{"x":1773552378649,"y":44.999487652423404},{"x":1773552383653,"y":45.45228133094242},{"x":1773552388648,"y":44.39017096147136},{"x":1773552393649,"y":29.249187112030743},{"x":1773552398649,"y":51.48776834747878},{"x":1773552403663,"y":54.37058121384629},{"x":1773552408659,"y":51.85576874653775},{"x":1773552413648,"y":54.93778392257555},{"x":1773552418657,"y":64.27477900143217},{"x":1773552423648,"y":57.09227137432003},{"x":1773552428657,"y":53.592679633981696},{"x":1773552433648,"y":49.00581366945136},{"x":1773552438651,"y":53.854187388104236},{"x":1773552443663,"y":53.13946468102234},{"x":1773552448649,"y":46.26239700004934},{"x":1773552453650,"y":50.81811832784595},{"x":1773552458649,"y":51.93008370260955},{"x":1773552463649,"y":51.15291561743939},{"x":1773552468661,"y":44.50264391898633},{"x":1773552473647,"y":47.04218236928517},{"x":1773552478648,"y":52.3667462211615},{"x":1773552483648,"y":50.9212976575517},{"x":1773552488649,"y":50.81688733449913},{"x":1773552493648,"y":49.32089516168012},{"x":1773552498660,"y":52.225104769507084},{"x":1773552503649,"y":52.67999204455052},{"x":1773552508652,"y":44.96482510946032},{"x":1773552513654,"y":50.543235600535795},{"x":1773552518659,"y":53.38987278623099},{"x":1773552523657,"y":51.00517515923567},{"x":1773552528649,"y":41.83440753594447},{"x":1773552533649,"
windows-latest (auto)
AxiosError: Request failed with status code 403
windows-latest (auto)
[Workflow Telemetry] AxiosError
windows-latest (auto)
Process completed with exit code 1.
windows-latest (auto)
'list_finemap_methods' is not an exported object from 'namespace:echofinemap'
windows-latest (auto)
R CMD check found ERRORs
ubuntu-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, conda-incubator/setup-miniconda@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
ubuntu-latest (auto)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
macOS-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, conda-incubator/setup-miniconda@v3, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (auto)
prior_weights can't have NAs. Replacing with 0.
macOS-latest (auto)
Could not identify any conda_env matching existing conda environments.
macOS-latest (auto)
Could not identify any conda_env matching existing conda environments.
macOS-latest (auto)
Could not identify any conda_env matching existing conda environments.
macOS-latest (auto)
Could not identify any conda_env matching existing conda environments.
macOS-latest (auto)
dependency ‘BiocVersion’ is not available
macOS-latest (auto)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (auto)
harfbuzz 12.3.2 is already installed and up-to-date. To reinstall 12.3.2, run: brew reinstall harfbuzz
macOS-latest (auto)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
windows-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, conda-incubator/setup-miniconda@v3, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (auto)
prior_weights can't have NAs. Replacing with 0.
windows-latest (auto)
Could not identify any conda_env matching existing conda environments.
windows-latest (auto)
Could not identify any conda_env matching existing conda environments.
windows-latest (auto)
Could not identify any conda_env matching existing conda environments.
windows-latest (auto)
Could not identify any conda_env matching existing conda environments.
windows-latest (auto)
dependency 'BiocVersion' is not available
windows-latest (auto)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.

Artifacts

Produced during runtime
Name Size Digest
Linux-biocversion-devel-r-auto-results
1.51 MB
sha256:324a37d524495e2669405f8a46b9e72f45be0a1eefaffb0a23c0e6186ebbad48
Windows-biocversion-release-r-auto-results
1.53 MB
sha256:05765a353942cf18af6ae594f1449a2e26c522361d70935f43200723fd6821cc
macOS-biocversion-release-r-auto-results
1.53 MB
sha256:370132885fe7e574acc8f43de120d0dda3673850095ace4c8fa9b77a6a43dc0d