echotabix 1.0.1
Converts genomic data files to tabix format (including liftover, sorting, compression, and indexing steps) with a single function. Retrieves local or remote tabix VCF/tabular files with helper functions for creating queries from subsets of genomic data (e.g GWAS/QTL loci, genomic ranges). Multiple methods available at each step, including wrapper functions for an up-to-date,
Changes
- Full restoration: passing R CMD check on all configured CI runners (Ubuntu, macOS, Windows)
- Modernized DESCRIPTION, CITATION, and namespace
- Added comprehensive test coverage
- Updated GitHub Actions workflow (
rworkflows.yml)
Part of the echoverse suite for genomic fine-mapping.