Resolve MixedArguments bug in initialization macro.
#1435
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| name: CI | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| types: [review_requested,reopened,synchronize] | |
| push: | |
| branches: | |
| - 'main' | |
| tags: | |
| - v** | |
| check_run: | |
| types: [rerequested] | |
| schedule: | |
| - cron: '0 8 * * 1' # run the cron job one time per week on Monday 8:00 AM | |
| concurrency: | |
| # Skip intermediate builds: always. | |
| # Cancel intermediate builds: only if it is a pull request build. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }} | |
| permissions: | |
| actions: write | |
| contents: read | |
| jobs: | |
| paper: | |
| name: Paper Preview | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: openjournals/openjournals-draft-action@master | |
| with: | |
| journal: joss | |
| # This should be the path to the paper within your repo. | |
| paper-path: paper/paper.md | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: paper | |
| # This is the output path where Pandoc will write the compiled | |
| # PDF. Note, this should be the same directory as the input | |
| # paper.md | |
| path: paper/paper.pdf | |
| test: | |
| name: Tests ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }} | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: ${{ contains(matrix.version, 'nightly') }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: | |
| - '1.10' | |
| - '1.11' | |
| - '1.12' | |
| os: | |
| - ubuntu-latest | |
| arch: | |
| - x64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| include-all-prereleases: true | |
| version: ${{ matrix.version }} | |
| arch: ${{ matrix.arch }} | |
| - uses: julia-actions/cache@v2 | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| - uses: julia-actions/julia-runtest@v1 | |
| env: | |
| USE_DEV: "false" | |
| LOG_USING_RXINFER: "false" | |
| JULIA_FASTCHOLESKY_THROW_ERROR_NON_SYMMETRIC: 1 | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| files: lcov.info | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Archive test artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-output-${{ matrix.version }}-${{ matrix.os }}-${{ matrix.arch }} | |
| path: test/_output | |
| test-examples: | |
| name: Examples | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout RxInfer | |
| uses: actions/checkout@v4 | |
| with: | |
| path: RxInfer.jl | |
| - name: Checkout Examples | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: ReactiveBayes/RxInferExamples.jl | |
| path: RxInferExamples.jl | |
| - uses: julia-actions/setup-julia@v2 | |
| - uses: julia-actions/cache@v1 | |
| - name: Build and test examples | |
| env: | |
| LOG_USING_RXINFER: "false" | |
| JULIA_FASTCHOLESKY_THROW_ERROR_NON_SYMMETRIC: 1 | |
| run: | | |
| julia -e 'using Pkg; Pkg.add("Weave"); Pkg.develop(path="RxInfer.jl"); Pkg.precompile()' | |
| cd RxInferExamples.jl | |
| make examples-dev RXINFER=../RxInfer.jl | |
| docs: | |
| name: Documentation | |
| runs-on: ubuntu-latest | |
| needs: | |
| - test | |
| - test-examples | |
| permissions: | |
| contents: write | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: julia-actions/setup-julia@v2 | |
| - uses: julia-actions/cache@v2 | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| - run: make docs | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| LOG_USING_RXINFER: "false" | |
| JULIA_FASTCHOLESKY_THROW_ERROR_NON_SYMMETRIC: 1 | |
| format-check: | |
| name: Code Format Check | |
| runs-on: ubuntu-latest | |
| # Don't run on PRs that come from forks as they won't have permission to create PRs | |
| if: github.event_name == 'pull_request' && github.event.pull_request.head.repo.full_name == github.repository | |
| permissions: | |
| contents: write # Needed to push commits | |
| pull-requests: write # Needed to create PRs and write comments | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.head_ref }} | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: julia-actions/setup-julia@v2 | |
| - uses: julia-actions/cache@v2 | |
| # Find existing format PR if any | |
| - name: Find existing format PR | |
| id: find_pr | |
| uses: actions/github-script@v7 | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| script: | | |
| const prNumber = ${{ github.event.pull_request.number }}; | |
| const owner = context.repo.owner; | |
| const repo = context.repo.repo; | |
| // Look for open PRs with our auto-format branch pattern that targets this PR's branch | |
| const prs = await github.rest.pulls.list({ | |
| owner, | |
| repo, | |
| state: 'open', | |
| base: '${{ github.head_ref }}' | |
| }); | |
| const formatPr = prs.data.find(pr => pr.head.ref.startsWith('auto-format-') && | |
| pr.title === "🤖 Auto-format Julia code"); | |
| if (formatPr) { | |
| console.log(`Found existing format PR: #${formatPr.number}`); | |
| return formatPr.number; | |
| } | |
| return ''; | |
| - name: Run formatter check | |
| id: format_check | |
| run: | | |
| if ! make lint; then | |
| echo "format_needs_fix=true" >> $GITHUB_OUTPUT | |
| else | |
| echo "format_needs_fix=false" >> $GITHUB_OUTPUT | |
| fi | |
| # Close any existing formatting PR if the check now passes | |
| - name: Close existing format PR if check passes | |
| if: steps.format_check.outputs.format_needs_fix == 'false' && steps.find_pr.outputs.result != '' | |
| uses: actions/github-script@v7 | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| script: | | |
| const formatPrNumber = Number(${{ steps.find_pr.outputs.result }}); | |
| if (formatPrNumber === 0) { | |
| return; | |
| } | |
| const owner = context.repo.owner; | |
| const repo = context.repo.repo; | |
| // Close the PR with a comment | |
| await github.rest.issues.createComment({ | |
| owner, | |
| repo, | |
| issue_number: formatPrNumber, | |
| body: `Closing this PR as the code formatting issues in the original PR have been resolved.` | |
| }); | |
| await github.rest.pulls.update({ | |
| owner, | |
| repo, | |
| pull_number: formatPrNumber, | |
| state: 'closed' | |
| }); | |
| console.log(`Closed format PR #${formatPrNumber} as the original PR now passes formatting checks.`); | |
| - name: Apply formatter if needed | |
| if: steps.format_check.outputs.format_needs_fix == 'true' | |
| run: | | |
| make format | |
| - name: Commit changes and create/update PR | |
| if: steps.format_check.outputs.format_needs_fix == 'true' | |
| uses: peter-evans/create-pull-request@v7 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| commit-message: "🤖 Auto-format Julia code" | |
| title: "🤖 Auto-format Julia code" | |
| body: | | |
| This PR was automatically created to fix Julia code formatting issues. | |
| The formatting was applied using JuliaFormatter according to the project's style guidelines. | |
| Please review the changes and merge if appropriate. | |
| branch: auto-format-${{ github.event.pull_request.number }} | |
| base: ${{ github.head_ref }} | |
| delete-branch: true | |
| labels: | | |
| automated pr | |
| code style | |
| id: create-pr | |
| - name: Comment on original PR | |
| if: steps.format_check.outputs.format_needs_fix == 'true' && steps.create-pr.outputs.pull-request-number && steps.find_pr.outputs.result == '' | |
| uses: actions/github-script@v7 | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| script: | | |
| const prNumber = ${{ github.event.pull_request.number }}; | |
| const formatPrNumber = ${{ steps.create-pr.outputs.pull-request-number }}; | |
| const formatPrUrl = `https://github.com/${{ github.repository }}/pull/${formatPrNumber}`; | |
| await github.rest.issues.createComment({ | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| issue_number: prNumber, | |
| body: `## 🤖 Code Formatting | |
| This PR has some code formatting issues. I've created [PR #${formatPrNumber}](${formatPrUrl}) with the necessary formatting changes. | |
| You can merge that PR into this branch to fix the code style check. | |
| Alternatively, you can run \`make format\` locally and push the changes yourself.` | |
| }); | |
| - name: Comment on original PR for updated formatting PR | |
| if: steps.format_check.outputs.format_needs_fix == 'true' && steps.create-pr.outputs.pull-request-number && steps.find_pr.outputs.result != '' | |
| uses: actions/github-script@v7 | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| script: | | |
| const prNumber = ${{ github.event.pull_request.number }}; | |
| const formatPrNumber = ${{ steps.create-pr.outputs.pull-request-number }}; | |
| const formatPrUrl = `https://github.com/${{ github.repository }}/pull/${formatPrNumber}`; | |
| await github.rest.issues.createComment({ | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| issue_number: prNumber, | |
| body: `## 🤖 Code Formatting | |
| Your PR still has some code formatting issues. I've updated [PR #${formatPrNumber}](${formatPrUrl}) with the necessary formatting changes. | |
| You can merge that PR into this branch to fix the code style check. | |
| Alternatively, you can run \`make format\` locally and push the changes yourself.` | |
| }); | |
| # Fail the job if formatting was needed and applied | |
| - name: Fail if formatting was needed | |
| if: steps.format_check.outputs.format_needs_fix == 'true' | |
| run: | | |
| echo "::error::Code formatting issues detected. A PR with fixes has been created, but this check is failing to indicate that formatting needs to be fixed." | |
| exit 1 | |