Simplify fix pipeline and reduce duplication#17
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- Batch file I/O in apply_fixes (one read/write per file instead of per diagnostic) - Extract write_manifest helper to pair with read_manifest - Extract format_dep_value helper (was duplicated in diagnostic.rs and fix.rs) - Add Display impl for Severity (replaces manual match) - Extract STRIPPED_KEYS constant for rewrite_dep_entry branches
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Batch file I/O, extract shared helpers, remove duplicated logic.