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Adding documentation for the PrincipalComponentAnalysis EnsembleMetric #52

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@vmullig vmullig commented Feb 25, 2022 •
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This PR should be merged with RosettaCommons/main#5838.

TODO:

  • Add an example script.
  • List named values produced.
  • Explain use with residue selectors.
  • Document visualization app.
  • Add diagram explaining.

vmullig added 30 commits February 8, 2022 16:13
@vmullig
Adding ensemble metrics to sidebars.
1eed1f8
@vmullig
Updating main RosettaScripts page.
9156829
@vmullig
Adding page for CentralTendency metric.
35cb717
@vmullig
Updating auto-generated docs.
cc023e6
@vmullig
Adding auto-generated ensemble metric docs.
a18aca6
@vmullig
Updating CentralTendency ensemble metric doc.
3e8cc7f
@vmullig
Working on documentation for EnsembleMetrics.
0e5918f
@vmullig
Fleshing out EnsembleMetric documentation.
b3730e1
@vmullig
Updating auto-generated docs.
97d7892
@vmullig
Adding note about accessing named values.
ca9eebd
@vmullig
Adding note about filtering.
bbfdb09
@vmullig
Revising text slightly.
9dd6e89
@vmullig
Adding note about MPI mode.
9629b4b
@vmullig
Adding example of internal generation mode.
3301900
@vmullig
Adding note about multithreading.
a5778bb
@vmullig
Updating note about multi-threading.
a045962
@vmullig
Adding example for mode 3.
eb93e85
@vmullig
Add EnsembleFilter docs to filter list.
62a9158
@vmullig
Moving some filters that were in the wrong folder.
d38608f
@vmullig
Adding documentation for EnsembleFilter.
11215f2
@vmullig
Minor typos.
b7e9ef7
@vmullig
Expanding note about mode.
fc6e674
@vmullig
Minor tweak.
08dc81e
@vmullig
Merge remote-tracking branch 'origin/master' into vmullig/ensemble_me…
0b2cc38 
…tric_doc
@vmullig
Updating note about MPI.
af0cded
@vmullig
Updating CentralTendency and FragmentScore auto-generated docs.
41dacf1
@vmullig
Merge branch 'vmullig/ensemble_metric_doc' into vmullig/ensemble_metr…
faa5e70 
…ic_mpi_docs
@vmullig
Adding auto-generated docs for the PCA ensemble metric.
4d5dc12
@vmullig
Updating EnsembleMetrics page.
a282ac4
@vmullig
Updating CentralTendency page.
7e6a155
@vmullig vmullig self-assigned this Feb 25, 2022
vmullig added 12 commits March 11, 2022 11:41
@vmullig
Merge remote-tracking branch 'origin/master' into vmullig/ensemble_me…
22503cc 
…tric_doc
@vmullig
Updating auto-generated docs.
99146f7
@vmullig
Merge branch 'vmullig/ensemble_metric_doc' into vmullig/ensemble_metr…
e23b820 
…ic_mpi_docs
@vmullig
Merge remote-tracking branch 'origin/master' into vmullig/ensemble_me…
af0a491 
…tric_mpi_docs
@vmullig
Update documentation with mention of support in MPIFileBufJobDistribu…
4fa4729 
…tor for ensemble metrics.
@vmullig
Merge remote-tracking branch 'origin/master' into vmullig/ensemble_me…
2549d1b 
…tric_doc
@vmullig
Merge branch 'vmullig/ensemble_metric_doc' into vmullig/ensemble_metr…
bfe5514 
…ic_mpi_docs
@vmullig
Merge remote-tracking branch 'origin/master' into vmullig/ensemble_me…
f2cbac0 
…tric_doc
@vmullig
Merge branch 'vmullig/ensemble_metric_doc' into vmullig/ensemble_metr…
9c8700e 
…ic_mpi_docs
@vmullig
Merge remote-tracking branch 'origin/master' into vmullig/ensemble_me…
802ce09 
…tric_doc
@vmullig
Merge branch 'vmullig/ensemble_metric_doc' into vmullig/ensemble_metr…
1aed331 
…ic_mpi_docs
@vmullig
Merge branch 'vmullig/ensemble_metric_mpi_docs' into vmullig/pca_metr…
b922fd9 
…ic_doc
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