Releases: Rosswell/variant-search-app
Releases · Rosswell/variant-search-app
Initial MVP
Purpose is mostly just for creating a working application.
Unfinished / TODO:
- Documentation on functionality - this is sparse at best. Most in-code commentary is weak
- Testing - no integration tests and incomplete unit testing
- Dockerization - currently only the backend is in Docker, creating a convoluted setup process, and redundant local library installation
- DB optimization - currently the flat file is just represented in one table, but there is nuanced structure there, which is better represented as relational tables.
- Data normalization
- Currently, the nomenclature for variant representation is all over the place. Should be using the hgvs library for this
- Some fields are concatenated lists as strings
- Most fields are being represented as a strings, though some can be reduced to
int
ordatetime.date
with some preprocessing of value prior to ingestion