Rename_filename.sh

Renames .vcf files.

Rename_sample_name_in_vcf_header.sh

Updates sample names in the VCF header.

VCF_region_select.sh

Extracts specific regions of interest from a VCF file.

VC_merge.sh

Merges VCF files using bcftools merge.

Create_info_ID_group_list.sh

Generates a correspondence table for "Otherinfo[num]", "SampleID", and "[SampleGroup]SampleID".

annot_txt_add_IDstrings_step01.sh

Converts GT fields in "multianno.txt" to ".", "(het)", or "(hom)".

annot_txt_add_IDstrings_step02.py

Assembles "[SampleGroup]SampleID(GT)" strings into a single string.