Add gene-level alignment codes and example notebook 5c#24

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Gaoyuan-Li wants to merge 7 commits intomainfrom anchor_genes

Commits on Feb 13, 2025

adding func enr functions
Jon Monk
committed

Commits on Feb 25, 2025

Commits on Mar 3, 2025

fixing allele file ref
Jon Monk
committed

Commits on Mar 12, 2025

Merge branch 'functional-enrichments' into anchor_genes
Jon Monk
committed
updates to nb 5c
Jon Monk
committed
clearing outputs
Jon Monk
committed