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Add support for serial and parallel GDF read write. #1

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@Cadair Cadair commented Oct 28, 2014

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Stuart Mumford and others added 30 commits October 28, 2014 11:37
Renamed the stuart module to default and seperated the gravity
parameters into their own file.

Also some comments in vacio as part of some reading.
We now write all arrays in 3D, always. The dataset creation code is now
in vacio.t because of a bug in gcc-fortran, or at least what looks like
one.
It seems at this point that the bug is not in the dataset reading (as
this appears to be working, giving the same means as python), it seems
that the non-fullini read is also not working with the binary input.
Why is SAC not running when no ghost cells are specified?!
There seems to now be other issues, firstly with gdfout.
Need some robust code, but it seems to be working.
Currently not working is dealing with making gdf files not add the
processor rank to the filename.
The main dataset write now seems to be working.

However domain_left_edge and domain_right_edge are not yet correct.
Also general testing has not poven successful.
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