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Add generate tmb module #26

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Add generate tmb module #26

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@thomasyu888 thomasyu888 commented Jan 9, 2025 •
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Problem

TMB needs to be generated per release

Solution

Use cbioportal's TMB code to generate the TMB

TODO

  • Make the nextflow workflow work
  • The shell script should be re-written in Python since we never pass around the synapse id of the release folder

@thomasyu888 thomasyu888 requested a review from a team as a code owner January 9, 2025 13:12
thomasyu888
thomasyu888 commented Jan 9, 2025
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modules/generate_tmb.nf
@@ -1,0 +1,26 @@

params.release_folder_synid = 'syn62069187'
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@thomasyu888 thomasyu888 Jan 9, 2025

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This needs to be redone

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sonarqubecloud bot commented Jan 9, 2025

Quality Gate Passed Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
1 Security Hotspot
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud

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