v0.0.3

Highlights

Improve the efficiency of maf processing:

• Added support for user-defined MAF center lists - this offers us flexibility with running maf processing(e.g: we can specify a list of centers to re-run processing with if needed)
• Added the ability to allow us to have individual maf center processing jobs (serially) - this means we can resume maf processing at the center where it fails instead of starting over at the beginning

Converted data guide generation to Python and Quarto for easier maintenance

Technical Features

• [GEN-2152] Allow user-defined MAF center list in MAF processing step by @danlu1, @rxu17 in (#38, #41)
• [GEN-1909] Customize copy_recursive function because access requirements are now added to the data by @danlu1 (#33)
• [GEN-1833, GEN-1865] Convert data guide to Python & Quarto by @thomasyu888 in (#32)

Bug Fixes

• [GEN-1959] Ignore null cpt_genie_sample_ids during check BPC retraction step due to germline samples by @thomasyu888 in (#34)
• [GEN-2154] Add missing 19 series, correct 20 series in map by @rxu17 in (#37)
• [GEN-1614] Bump memory for consortium release process by @danlu1 in (#23)

Other

• [DPE-1253] Add PR description template by @danlu1 in (#31)
• [GEN-1473] Update staging seq_date for 16.5 aacrgenie package release by @rxu17 (#27)
• [GEN-1622] Update cfDNA part in data_guide by @danlu1 in (#24)
• Update instructions to run data guide manually by @rxu17 in (#28)
• Added UMIAMI genomic profile and oncoTree assignment strategy to data guide by @Oliversinn in (#29)

New Contributors

• @danlu1 made their first contribution in #23
• @Oliversinn made their first contribution in #29

Full Changelog: v0.0.2...v0.0.3