Merge pull request #46 from Sage-Bionetworks-Workflows/bwmac/orca-261/hdf5_support

[ORCA-261] Adds HDF5Suite

Author: BWMac

src/dcqc/file.py

@@ -112,6 +112,7 @@ def get_file_type(cls, file_type: str) -> FileType:
 FileType("CSV", (".csv"), "format_3752")
 FileType("BAM", (".bam"), "format_2572")
 FileType("FASTQ", (".fastq", ".fastq.gz", ".fq", ".fq.gz"), "format_1930")
+FileType("HDF5", (".hdf", ".hdf5", ".h5", ".he5", ".h5ad"), "format_3590")
 
 
 # TODO: Leverage post-init function in dataclasses

src/dcqc/suites/suites.py

@@ -53,3 +53,7 @@ class TXTSuite(FileSuite):
 
 class CSVSuite(FileSuite):
     file_type = FileType.get_file_type("CSV")
+
+
+class HDF5Suite(FileSuite):
+    file_type = FileType.get_file_type("HDF5")