knit2synapse: Knit RMarkdown files to Synapse wikis.

This version has synapser as a dependency. The last version of this package to use the rSynapseClient is v0.1.

Installing

First, install the synapser package:

install.packages("synapser", repos = c("http://ran.synapse.org", "https://cloud.r-project.org"))

The, using devtools:

devtools::install_github("Sage-Bionetworks/knit2synapse")

Usage

knitfile2synapse(markdownfile, owner='syn123', parentWikiId = NULL, wikiName = NULL, overwrite = FALSE)

• markdownfile: a path to a markdown file (including RMarkdown files)
• owner: The Entity where the Wiki page should go (this can be a synapser Project, File, or Folder object, or a string specifying the Synapse ID)
• parentWikiId: If supplied, will make a sub-Wiki underneath this Wiki ID. Note that this is not a Synapse ID (does not start with syn, it is an integer)

Contributing

To contribute, fork the main repo, branch off a feature branch from master, make your changes and commit them, push to your fork and submit a pull request for Sage-Bionetworks/knit2synapse:develop.