[SCHEMATIC-192] v24.12.1 release (dev -> main) #1557
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Co-authored-by: BryanFauble <17128019+BryanFauble@users.noreply.github.com>
* [FDS-2386] Synapse entity tracking and code concurrency updates
Update CODEOWNERS
…bute-unit-tests Fds 2333 validate attribute unit tests
[SCHEMATIC-1] BugFix: manifest submission when data previously annotated without manifest upload
* Authenticated export of telemetry data, updating to HTTP otel library
…tests [FDS-2238, FDS-2236] Automate CLI test plan
…LI` commands from potentially erroring when doing a pip install (#1540) * Make otel flash non-optional * Add dependencies as non-optional
…test runs (#1550) * Support exporting telemetry data from GH run via access token retrieved via oauth2
…Path module for checking cache size (#1542) * Add version to click cli * Add version * Run black * Reformat * Fix * Update schematic/schemas/data_model_parser.py * Add test for check_synapse_cache_size * Reformat * Fix tests * Remove unused parameter * Install all-extras for now * Make otel flash non-optional * Update dockerfile * Add dependencies as non-optional * Update pyproject toml * Fix trivy issue * Add service version * Run black * Move all utils.general tests into separate folder * Use pre-commit * Add updates to contribution doc * Fix * Add service version to log provider --------- Co-authored-by: BryanFauble <17128019+BryanFauble@users.noreply.github.com>
* Set instance id in github CI run, uninstrument flask auto during integration test run
…ne doesn't have `entityId` (#1551) * adds error handling * adds unit tests for _get_file_entityIds * updates error message * adds entityid check to parent func * updates docstring
source manifest file paths from synapse fileviews at generation
… with the NA values argument (#1553) * Wrap pandas functions to support not including `None` with the NA values argument * Ignore types * pylint issues * ordering of ignore * Add to integration test to cover none in a manifest * Add additional test for manifest * [SCHEMATIC-210] Add attribute to nones data model (#1555) Update example_test_nones.model.csv component and add new invalid manifest with nones * first commit * ran black * add test for validateModelManifest * [SCHEMATIC-214] change data model and component (#1556) * add valid values to Patient attributes * update data model * add test manifests * update test for new model * update test for new valid value * change test to use new manifests * remove uneeded test file * revert file * revert file * change tests to use new manifests * remove uneeded manifests * ran black * add tests back in * ran black * revert manifest * Split up valid and errored test as separate testing functions * Remove unused import --------- Co-authored-by: Gianna Jordan <61707471+GiaJordan@users.noreply.github.com> Co-authored-by: Andrew Lamb <andrewelamb@gmail.com> Co-authored-by: Thomas Yu <thomas.yu@sagebase.org>
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Dec 16, 2024
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v24.12.1 release - creating it so the tests can run