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Correlations and tuning
Correlations and tuning
 
 
LFP_analysis
LFP_analysis
 
 
NPXAnalysis2022
NPXAnalysis2022
 
 
NPX_Spikesorting
NPX_Spikesorting
 
 
Visual-response-analysis
Visual-response-analysis
 
 
behaviour
behaviour
 
 
behavioural_state_detector
behavioural_state_detector
 
 
buzcode
buzcode
 
 
phy
phy
 
 
place_cell_analysis
place_cell_analysis
 
 
ploting
ploting
 
 
population_analysis
population_analysis
 
 
preprocessing
preprocessing
 
 
replay_analysis
replay_analysis
 
 
spatial_modulation_analysis
spatial_modulation_analysis
 
 
spikes
spikes
 
 
summary_functions
summary_functions
 
 
theta_analysis
theta_analysis
 
 
toolboxes
toolboxes
 
 
utility
utility
 
 
.DS_Store
.DS_Store
 
 
.gitignore
.gitignore
 
 
CalculatePSTH.m
CalculatePSTH.m
 
 
Detect_events.m
Detect_events.m
 
 
LFP_analysis_masa.m
LFP_analysis_masa.m
 
 
LFP_analysis_masa_condensed.asv
LFP_analysis_masa_condensed.asv
 
 
LFP_analysis_masa_condensed.m
LFP_analysis_masa_condensed.m
 
 
LFP_extraction_and_event_detection_pipeline_temp.m
LFP_extraction_and_event_detection_pipeline_temp.m
 
 
LICENSE
LICENSE
 
 
Phy code for gui.py
Phy code for gui.py
 
 
README.md
README.md
 
 
SUA_analysis_masa.m
SUA_analysis_masa.m
 
 
Sleep_analysis_Ellie.m
Sleep_analysis_Ellie.m
 
 
alignToSglxTime.m
alignToSglxTime.m
 
 
alignquad2photodiode.m
alignquad2photodiode.m
 
 
check_spatial_response_stability.asv
check_spatial_response_stability.asv
 
 
check_spatial_response_stability.m
check_spatial_response_stability.m
 
 
examine_motion_correction.m
examine_motion_correction.m
 
 
extractLFP.m
extractLFP.m
 
 
extractNumFromStr.m
extractNumFromStr.m
 
 
extract_laps_masa.m
extract_laps_masa.m
 
 
extract_open_field_sync_pulse.m
extract_open_field_sync_pulse.m
 
 
extract_perievent_spiketime_histogram.m
extract_perievent_spiketime_histogram.m
 
 
extracted_PSD.mat
extracted_PSD.mat
 
 
fix_task_info.m
fix_task_info.m
 
 
generate_wheel_log_from_nidq.asv
generate_wheel_log_from_nidq.asv
 
 
generate_wheel_log_from_nidq.m
generate_wheel_log_from_nidq.m
 
 
import_and_align_Masa_VR_Bonsai.m
import_and_align_Masa_VR_Bonsai.m
 
 
main.m
main.m
 
 
main_CrossDayMULTIPLOTS_PSTH_Ellie.asv
main_CrossDayMULTIPLOTS_PSTH_Ellie.asv
 
 
main_CrossDayMULTIPLOTS_PSTH_Ellie.m
main_CrossDayMULTIPLOTS_PSTH_Ellie.m
 
 
main_CrossStimTypeMULTIPLOTS_PSTH_agg_Ellie.m
main_CrossStimTypeMULTIPLOTS_PSTH_agg_Ellie.m
 
 
main_CrossStimTypeMULTIPLOTS_PSTH_su_Ellie.m
main_CrossStimTypeMULTIPLOTS_PSTH_su_Ellie.m
 
 
main_LFP_analysis.asv
main_LFP_analysis.asv
 
 
main_LFP_analysis.m
main_LFP_analysis.m
 
 
main_LFP_analysis_DT.asv
main_LFP_analysis_DT.asv
 
 
main_LFP_analysis_DT.m
main_LFP_analysis_DT.m
 
 
main_LFP_analysis_sleep - Copy.m
main_LFP_analysis_sleep - Copy.m
 
 
main_LFP_analysis_sleep.asv
main_LFP_analysis_sleep.asv
 
 
main_LFP_analysis_sleep.m
main_LFP_analysis_sleep.m
 
 
main_LFP_analysis_sleep_221125_backup.m
main_LFP_analysis_sleep_221125_backup.m
 
 
main_LFP_preprocessing_and_saving.asv
main_LFP_preprocessing_and_saving.asv
 
 
main_LFP_preprocessing_and_saving.m
main_LFP_preprocessing_and_saving.m
 
 
main_NPX_data_preprocessing.m
main_NPX_data_preprocessing.m
 
 
main_NPX_data_preprocessing_DT.asv
main_NPX_data_preprocessing_DT.asv
 
 
main_NPX_data_preprocessing_DT.m
main_NPX_data_preprocessing_DT.m
 
 
main_NPX_data_preprocessing_chronic.asv
main_NPX_data_preprocessing_chronic.asv
 
 
main_NPX_data_preprocessing_chronic.m
main_NPX_data_preprocessing_chronic.m
 
 
main_NPX_data_preprocessing_chronic_DT.asv
main_NPX_data_preprocessing_chronic_DT.asv
 
 
main_NPX_data_preprocessing_chronic_DT.m
main_NPX_data_preprocessing_chronic_DT.m
 
 
main_NPX_data_preprocessing_chronic_Ellie.asv
main_NPX_data_preprocessing_chronic_Ellie.asv
 
 
main_NPX_data_preprocessing_chronic_Ellie.m
main_NPX_data_preprocessing_chronic_Ellie.m
 
 
main_NPX_data_preprocessing_chronic_Jork.m
main_NPX_data_preprocessing_chronic_Jork.m
 
 
main_PCA_of_PSTH_Ellie.asv
main_PCA_of_PSTH_Ellie.asv
 
 
main_PCA_of_PSTH_Ellie.m
main_PCA_of_PSTH_Ellie.m
 
 
main_TF_sleep_analysis.asv
main_TF_sleep_analysis.asv
 
 
main_TF_sleep_analysis.m
main_TF_sleep_analysis.m
 
 
main_UP_ripple_interaction_analysis.asv
main_UP_ripple_interaction_analysis.asv
 
 
main_UP_ripple_interaction_analysis.m
main_UP_ripple_interaction_analysis.m
 
 
main_UP_ripple_interaction_analysis_Markov.m
main_UP_ripple_interaction_analysis_Markov.m
 
 
main_UP_ripple_interaction_analysis_backup.m
main_UP_ripple_interaction_analysis_backup.m
 
 
main_V1_HPC_spatial_analysis.m
main_V1_HPC_spatial_analysis.m
 
 
main_V1_population_events_analysis.asv
main_V1_population_events_analysis.asv
 
 
main_V1_population_events_analysis.m
main_V1_population_events_analysis.m
 
 
main_event_viewers.m
main_event_viewers.m
 
 
main_neural_trajectory_analysis.asv
main_neural_trajectory_analysis.asv
 
 
main_neural_trajectory_analysis.m
main_neural_trajectory_analysis.m
 
 
main_open_field_analysis.m
main_open_field_analysis.m
 
 
main_orientation_PSTH_Ellie.asv
main_orientation_PSTH_Ellie.asv
 
 
main_orientation_PSTH_Ellie.m
main_orientation_PSTH_Ellie.m
 
 
main_place_cell_analysis - Copy.m
main_place_cell_analysis - Copy.m
 
 
main_place_cell_analysis.m
main_place_cell_analysis.m
 
 
main_population_interaction_analysis.asv
main_population_interaction_analysis.asv
 
 
main_population_interaction_analysis.m
main_population_interaction_analysis.m
 
 
main_reactivation_analysis.asv
main_reactivation_analysis.asv
 
 
main_reactivation_analysis.m
main_reactivation_analysis.m
 
 
main_reactivation_analysis_backup.m
main_reactivation_analysis_backup.m
 
 
main_reactivation_analysis_backup_22042025.m
main_reactivation_analysis_backup_22042025.m
 
 
main_reactivation_interaction_analysis.asv
main_reactivation_interaction_analysis.asv
 
 
main_reactivation_interaction_analysis.m
main_reactivation_interaction_analysis.m
 
 

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VR_NPX_analysis

Code for preprocessing and analysing NPX data from V1 and HPC and MEC by Diao, Edd and Masa

  • Currently, many codes may not work properly due to rewriting. The update and rewriting are aimed at improving compatibility and readability of the code
  • Go to 2023_archive for the original code
  • Main branch code will be updated as the development branch code is stable.
  • development branch code is for testing and developing new code.

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Code for preprocessing and analysing NPX data from V1 and HPC and MEC by Diao, Edd and Masa

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