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How to run ENACT on the synthetic data?

Status: Open.

#69 In Sanofi-Public/enact-pipeline;

· weizhu365 opened on Mar 18, 2026

Running ENACT on space ranger 4 files crash

Status: Open.

#68 In Sanofi-Public/enact-pipeline;

· shimonjude opened on Mar 11, 2026

.btf file issue

Status: Open.

#67 In Sanofi-Public/enact-pipeline;

· Achiraa opened on Feb 9, 2026

Use cell type annotated scRNA-seq as input for annotation?

enhancementNew feature or requestNew feature or request

Status: Open.

#64 In Sanofi-Public/enact-pipeline;

· KunHHE opened on Sep 27, 2025

Incompatible Key Frame

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#63 In Sanofi-Public/enact-pipeline;

· lindsdudley opened on Sep 25, 2025

receiving this error : make: *** [Makefile:14: run_enact] Error 1

Status: Open.

#62 In Sanofi-Public/enact-pipeline;

· avpatel18 opened on Aug 15, 2025

IndexError when using .btf image (converted to .tiff) with ENACT

Status: Open.

#60 In Sanofi-Public/enact-pipeline;

· danjah21 opened on Jul 29, 2025

Spaceranger v4.0 released on 6/12 does cell/nucleus segmentation now, possible to use their custom Stardist model with ENACT?

enhancementNew feature or requestNew feature or request

Status: Open.

#54 In Sanofi-Public/enact-pipeline;

· sudarshan227 opened on Jun 14, 2025

AttributeError: 'MultiPolygon' object has no attribute 'exterior'

Status: Open.

Bug

#46 In Sanofi-Public/enact-pipeline;

· meaksu opened on May 15, 2025