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@dependabot dependabot bot commented on behalf of github Dec 30, 2025

Updates the requirements on Documenter, LiveServer, DocumenterTools, FiniteVolumeMethod1D, ExplicitImports, NonlinearSolve, LinearSolve, DomainSets, ReferenceTests, SciMLBase, CairoMakie, MethodOfLines, OrdinaryDiffEq, ModelingToolkit, SpecialFunctions and SafeTestsets to permit the latest version.
Updates Documenter to 1.16.1

Release notes

Sourced from Documenter's releases.

v1.16.1

The changes are documented in the CHANGELOG.md file.

Diff since v1.16.0

Changelog

Sourced from Documenter's changelog.

Version [v1.16.1] - 2025-11-21

Fixed

  • The -g is now passed to curl when checking links, to disable globbing, which could cause undesirable behavior when checking links containing characters like for example [, {, & or ?. (#2839, #2842)
  • Fixed insufficient paragraph spacing in HTML output for @docs blocks. ([#2845, #2847])
  • Don't expand details admonition by default. ([#2846, #2847])
  • Removed superfluous vertical space at end of @docs blocks. (#2849)

Version [v1.16.0] - 2025-11-14

Added

  • Added option treat_markdown_warnings_as_error which throws an error when encountering a markdown/interpolation warning (#2792, #2751)
  • Footnotes can now be previewed by hovering over the link. (#2080)
  • The version selector now attempts to stay on the same page when switching between documentation versions. If the page doesn't exist in the target version, it falls back to the version homepage. (#2801)
  • Allow named @eval blocks: such a block shares its execution context with all other @eval, @example, @repl and @setup blocks on the same page which use the same name. (#2074, #2812)

Changed

  • Page category is removed from the search index and now everything is in section category. (#2762, #2413)
  • Changed the docstring block accordions from a custom implementation to HTML details+summary tag. (#2772, #2773)
  • Improved the search tokenizer and custom trimmer to improve search results. (#1457, #2114, #2744)
  • Improved several warning/error messages to (more accurately) report the location (filename, line range) in which the warning/error originated. (#2426, #2752, #2793, #2803, #2809)
  • Warn/error if jldoctest starts with an empty line; or lacks empty line between two REPL prompts. (#2031, #2083, #2679, #2808)
  • The forcepush=true option to deploydocs now uses --force-with-lease instead of --force. (#2817)
  • Improved the generation of anchors for admonitions in HTML output to be more stable and e.g. not change due to changes of the internal representation across different Julia versions. (#2710)

Fixed

  • Modules for @example environments are now generated by eval'ing an expression, rather than invoking the Module constructor, which is not recommended. (#2683)

  • Fix handling of expandfirst entries containing slashes as path separators on Windows. (#1725, #2804)

  • Changed the header crossref step to eagerly fail when encountering a non-unique header slug. (#2668, #2787)

    This is potentially breaking and may cause some documentation builds to fail. Those previously passed but generated incorrect cross-references. You can fix this by ensuring that you have distinct headers across your markdown pages, or by using the @id syntax to give the headers unique slugs.

  • Changed CSS for the navigation "breadcrumbs" at the top of each page to avoid an issue where code blocks in there were missing spacing around them. (#1614, #2813)

  • Commit status for pull request previews publishing in GitHub Actions for out-of-repo deployment now works correctly. (#2814, #2816)

  • Fix assertions resp. errors being raised in @example, @eval, @repl blocks that are empty or contain code with syntax errors. (#2206, #2731, #2827)

Version [v1.15.0] - 2025-10-22

Changed

  • Created a warning for when the search index size is too big (500Kib). (#2423, #2753)
  • In the HTML output, the search modal can now be navigated using up and down keys. (#2761)

Other

... (truncated)

Commits
  • 55b500f Set version to 1.16.1 (#2848)
  • 56c72d8 Guide users to use workspaces when setting up Documenter (#2830)
  • a8b1479 Removed superfluous vertical space at end of @docs blocks (#2849)
  • a397e12 Fix spacing in @docs blocks; don't expand details admonition by default (...
  • 050ce55 Pass -g option to curl in linkchecker (#2842)
  • 26d0051 Build Julia HTML manual in regression tests (#2724)
  • a9af48e Set version to 1.16.0 (#2841)
  • a0665d5 Update changelog (#2840)
  • 1aecd99 Restore cd inside @eval, and add a test for it (#2837)
  • 4b6ff9d Add syntax highlight tags to docs/src/man/other-formats.md (#2838)
  • Additional commits viewable in compare view

Updates LiveServer to 1.5.0

Release notes

Sourced from LiveServer's releases.

v1.5.0

LiveServer v1.5.0

Diff since v1.4.0

Merged pull requests:

Closed issues:

  • Website with docs not working (#186)
  • Preventing refresh after making edit to files? (#196)
Commits

Updates DocumenterTools to 0.1.21

Release notes

Sourced from DocumenterTools's releases.

v0.1.21

DocumenterTools v0.1.21

Diff since v0.1.20

Merged pull requests:

Changelog

Sourced from DocumenterTools's changelog.

Version [v0.1.21] -- 2025-10-28

Other

  • The package now requires at least Julia 1.10. (#99)
  • The package now supports OpenSSH_jll v10. (#97, #99)

Version [v0.1.20] -- 2024-09-24

Changed

  • Allow OpenSSH_jll 9 as dependency. (#74, #91)
  • Git.jl is now used (instead of git from the system) for running git commands. (#70, #92)

Version [v0.1.19] -- 2024-01-28

Changed

  • Update the instructions about the GitHub interface genkeys prints. (#84, #85)

Version [v0.1.18] -- 2023-09-27

Changed

  • Declare compatibility with Documenter 1.0. (#80, #81)

Version [v0.1.17] -- 2023-06-29

Changed

  • The compiled CSS files generated by DocumenterTools are now minified. (#71)

Version [v0.1.16] -- 2022-09-14

Fixed

  • DocumenterTools now runs ssh-keygen in a temporary directory (rather than current working directory), avoiding issues with filesystem permissions or existing files. (#64, #65)

Version [v0.1.15] -- 2022-07-24

Changed

  • Declare compatibility with DocStringExtensions 0.9. (#59)
  • Declare compatibility with AbstractTrees 0.4. (#60)

Version [v0.1.14] -- 2022-05-08

Changed

... (truncated)

Commits

Updates FiniteVolumeMethod1D to 1.1.4

Release notes

Sourced from FiniteVolumeMethod1D's releases.

v1.1.4

Full Changelog: v1.1.3...v1.1.4

Commits

Updates ExplicitImports to 1.14.0

Release notes

Sourced from ExplicitImports's releases.

v1.14.0

ExplicitImports v1.14.0

Diff since v1.13.2

  • check_all_explicit_imports_are_public and check_all_qualified_accesses_are_public now accept a from keyword argument to limit checks to names from particular modules

Merged pull requests:

Commits

Updates NonlinearSolve to 4.13.0

Commits

Updates LinearSolve to 3.55.0

Release notes

Sourced from LinearSolve's releases.

v3.55.0

LinearSolve v3.55.0

Diff since v3.54.0

Merged pull requests:

Closed issues:

  • Enzyme + SparseArrays + LinearSolve = Not Happy (#835)
Commits
  • 320b008 Update Project.toml
  • 802e278 Merge pull request #862 from ChrisRackauckas-Claude/fix-chainrulescore-downgr...
  • 01ca9ae Bump ChainRulesCore compat to 1.25.1 for downgrade tests
  • 9c12593 Merge pull request #861 from abhro/admonitions
  • 173edc4 Fix headers for admonition warning blocks
  • 2127a61 Merge pull request #860 from ChrisRackauckas-Claude/fix-enzyme-sparse-sparsit...
  • eb1d270 Fix Enzyme sparse matrix sparsity pattern corruption (issue #835)
  • 5bd131d Update project version to 3.54.0
  • babd4b8 Merge pull request #859 from ChrisRackauckas-Claude/update-linear-verbosity-s...
  • c362bbc Fix stale imports check for SciMLLogging macro-generated code
  • Additional commits viewable in compare view

Updates DomainSets to 0.7.16

Release notes

Sourced from DomainSets's releases.

v0.7.16

DomainSets v0.7.16

Diff since v0.7.15

  • update compat entry for Makie
  • move rand to extension package

Merged pull requests:

Closed issues:

  • Don't use ×? (#67)
  • Don't export jacobian (#87)
  • Factor out Map's (#92)
  • Fix codecov (#164)
Commits
  • b68ee03 Merge pull request #172 from jaakkor2/compatsForMakie
  • 50473d0 Merge pull request #174 from JuliaApproximation/dh/randext
  • 66a6ed9 move random to extension
  • bdd8e76 Add compat for Makie 0.23, 0.24
  • 793535e version bump
  • a53aebc Merge pull request #170 from jaakkor2/makie0p22
  • f598cf1 Add compat for Makie 0.22
  • 5f55dd6 Merge pull request #169 from jishnub/jishnub/CI_lts
  • ebc9c88 Use setup julia v2 in CI
  • 2724337 Merge pull request #168 from jishnub/jishnub/CI_lts
  • Additional commits viewable in compare view

Updates ReferenceTests to 0.10.6

Commits

Updates SciMLBase to 2.131.0

Commits

Updates CairoMakie to 0.15.8

Commits

Updates MethodOfLines to 0.11.9

Commits

Updates OrdinaryDiffEq to 6.105.0

Release notes

Sourced from OrdinaryDiffEq's releases.

v6.105.0

OrdinaryDiffEq v6.105.0

Diff since v6.104.0

Merged pull requests:

Closed issues:

  • Using ArrayPartition of VectorOfArrays gives wrong results (#2728)
  • Cannot disable Jacobian sparsity pattern checking (#2924)
  • Uninferred variable in perform_step! for Rosenbrock (#2925)
Commits
  • 08e1065 Merge pull request #2944 from ChrisRackauckas-Claude/bump-minor-versions
  • 3ec06b5 Bump minor version of all packages
  • fbb34ab Merge pull request #2943 from ChrisRackauckas-Claude/fix-jet-test-resolution
  • 4330e3c Fix all JET v0.11 warnings in OrdinaryDiffEqFIRK (28/28 resolved)
  • d505242 Fix JET v0.11 static analysis warnings in OrdinaryDiffEqFIRK
  • ba7ec59 Fix JET v0.11 static analysis warnings in OrdinaryDiffEqNonlinearSolve and Or...
  • 73fbbc3 Fix JET v0.11 static analysis warnings about potentially undefined variables
  • a0684ef Update ODEProblemLibrary compat from 0.1.8 to 1.0 across 15 packages
  • a688533 Merge pull request #2941 from ChrisRackauckas-Claude/claude/rebase-hw-dae-gpu...
  • b600432 improve algebraic idx collection
  • Additional commits viewable in compare view

Updates ModelingToolkit to 11.4.0

Release notes

Sourced from ModelingToolkit's releases.

v11.4.0

ModelingToolkit v11.4.0

Diff since v11.3.0

Merged pull requests:

Changelog

Sourced from ModelingToolkit's changelog.

ModelingToolkit v11 Release Notes

Symbolics@7 and SymbolicUtils@4 compatibility

SymbolicUtils version 4 involved a major overhaul of the core symbolic infrastructure, which propagated to Symbolics as Symbolics version 7. ModelingToolkit has now updated to these versions. This includes significant type-stability improvements, enabling precompilation of large parts of the symbolic infrastructure and faster TTFX. It is highly recommended to read the Release Notes for SymbolicUtils@4 and the doc page describing the new variant structure before these release notes.

As part of these changes, ModelingToolkit has changed how some data is represented to allow precompilation. Notably, variable => value mappings (such as guesses) are stored as an AbstractDict{SymbolicT, SymbolicT}. Here, SymbolicT is a type that comes from Symbolics.jl, and is the type for all unwrapped symbolic values. This means that any non-symbolic values are stored as SymbolicUtils.Const variants. Mutation such as guesses(sys)[x] = 1.0 is still possible, and values are automatically converted. However, obtaining the value back requires usage of SymbolicUtils.unwrap_const or Symbolics.value.

Following is a before/after comparison of the TTFX for the most common operations in ModelingToolkit.jl. Further improvements are ongoing. Note that the timings do depend on many factors such as the exact system used, types passed to constructor functions, other packages currently loaded in the session, presence of array variables/equations, whether index reduction is required, and the behavior of various passes in mtkcompile. However, the numbers are good representations of the kinds of performance improvements that are possible due to the new infrastructure. There will continue to be improvements as this gets more extensive testing and we are better able to identify bottlenecks in compilation.

System constructor

The time to call System, not including the time taken for @variables or building the equations.

Before:

  0.243758 seconds (563.80 k allocations: 30.613 MiB, 99.48% compilation time: 3% of which was recompilation)
elapsed time (ns):  2.43757958e8
gc time (ns):       0
bytes allocated:    32099616
pool allocs:        563137
non-pool GC allocs: 16
malloc() calls:     651
free() calls:       0
minor collections:  0
full collections:   0

After:

</tr></table> 

... (truncated)

Commits
  • 9976e97 Merge pull request #4072 from SciML/as/bump-version
  • 6fe953c build: bump MTKBase minor version
  • a4ecf56 build: bump minor version
  • 4308dd9 Merge pull request #4071 from SciML/as/inline-linear-scc
  • 0b19ef4 fix: fix simplification of optimization system
  • 8eae438 test: avoid broken symbolic indexing syntax
  • 4e01c9e feat: add initsys_mtkcompile_kwargs keyword for problem constructors
  • 8e6a689 fix: handle API required by plotting
  • e19a539 feat: add copy for Schedule
  • 3495217 refactor: update to new unhack_system
  • Additional commits viewable in compare view

Updates SpecialFunctions to 2.6.1

Release notes

Sourced from SpecialFunctions's releases.

v2.6.1

SpecialFunctions v2.6.1

Diff since v2.6.0

Merged pull requests:

Closed issues:

  • Julia 1.12 / JET v0.10.7 warns that local variable nadj may be undefined (#502)
Commits

Updates SafeTestsets to 0.1.0

Release notes

Sourced from SafeTestsets's releases.

v0.1.0

SafeTestsets v0.1.0

Diff since v0.0.1

Closed issues:

  • Macro in test undefined (#3)
  • Using include() with a computed value (#7)

Merged pull requests:

Commits
  • f7897d5 Update Project.toml
  • 4cc3962 Update Project.toml
  • 4b6882e Update Project.toml
  • 36da15d Merge pull request #9 from YingboMa/myb/onemorelevel
  • 08d1b17 Update README.md
  • 5f24b73 Make inline testing backward compatible
  • 667b675 Merge pull request #8 from staticfloat/sf/modern_project_toml
  • ab306b0 Update package to moden Julia Project.toml format
  • e553edc Merge pull request #2 from JuliaTagBot/master
  • f4714be Install TagBot as a GitHub Action
  • Additional commits viewable in compare view

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Updates the requirements on [Documenter](https://github.com/JuliaDocs/Documenter.jl), [LiveServer](https://github.com/JuliaDocs/LiveServer.jl), [DocumenterTools](https://github.com/JuliaDocs/DocumenterTools.jl), [FiniteVolumeMethod1D](https://github.com/SciML/FiniteVolumeMethod1D.jl), [ExplicitImports](https://github.com/JuliaTesting/ExplicitImports.jl), [NonlinearSolve](https://github.com/SciML/NonlinearSolve.jl), [LinearSolve](https://github.com/SciML/LinearSolve.jl), [DomainSets](https://github.com/JuliaApproximation/DomainSets.jl), [ReferenceTests](https://github.com/JuliaTesting/ReferenceTests.jl), [SciMLBase](https://github.com/SciML/SciMLBase.jl), [CairoMakie](https://github.com/MakieOrg/Makie.jl), [MethodOfLines](https://github.com/SciML/MethodOfLines.jl), [OrdinaryDiffEq](https://github.com/SciML/OrdinaryDiffEq.jl), [ModelingToolkit](https://github.com/SciML/ModelingToolkit.jl), [SpecialFunctions](https://github.com/JuliaMath/SpecialFunctions.jl) and [SafeTestsets](https://github.com/YingboMa/SafeTestsets.jl) to permit the latest version.

Updates `Documenter` to 1.16.1
- [Release notes](https://github.com/JuliaDocs/Documenter.jl/releases)
- [Changelog](https://github.com/JuliaDocs/Documenter.jl/blob/master/CHANGELOG.md)
- [Commits](JuliaDocs/Documenter.jl@v0.1.0...v1.16.1)

Updates `LiveServer` to 1.5.0
- [Release notes](https://github.com/JuliaDocs/LiveServer.jl/releases)
- [Commits](JuliaDocs/LiveServer.jl@v0.1.0...v1.5.0)

Updates `DocumenterTools` to 0.1.21
- [Release notes](https://github.com/JuliaDocs/DocumenterTools.jl/releases)
- [Changelog](https://github.com/JuliaDocs/DocumenterTools.jl/blob/master/CHANGELOG.md)
- [Commits](JuliaDocs/DocumenterTools.jl@v0.1.0...v0.1.21)

Updates `FiniteVolumeMethod1D` to 1.1.4
- [Release notes](https://github.com/SciML/FiniteVolumeMethod1D.jl/releases)
- [Commits](v1.1.0...v1.1.4)

Updates `ExplicitImports` to 1.14.0
- [Release notes](https://github.com/JuliaTesting/ExplicitImports.jl/releases)
- [Commits](JuliaTesting/ExplicitImports.jl@v1.0.0...v1.14.0)

Updates `NonlinearSolve` to 4.13.0
- [Release notes](https://github.com/SciML/NonlinearSolve.jl/releases)
- [Commits](https://github.com/SciML/NonlinearSolve.jl/commits)

Updates `LinearSolve` to 3.55.0
- [Release notes](https://github.com/SciML/LinearSolve.jl/releases)
- [Commits](SciML/LinearSolve.jl@v0.1.0...v3.55.0)

Updates `DomainSets` to 0.7.16
- [Release notes](https://github.com/JuliaApproximation/DomainSets.jl/releases)
- [Commits](JuliaApproximation/DomainSets.jl@v0.0.1...v0.7.16)

Updates `ReferenceTests` to 0.10.6
- [Release notes](https://github.com/JuliaTesting/ReferenceTests.jl/releases)
- [Commits](https://github.com/JuliaTesting/ReferenceTests.jl/commits)

Updates `SciMLBase` to 2.131.0
- [Release notes](https://github.com/SciML/SciMLBase.jl/releases)
- [Commits](https://github.com/SciML/SciMLBase.jl/commits)

Updates `CairoMakie` to 0.15.8
- [Release notes](https://github.com/MakieOrg/Makie.jl/releases)
- [Changelog](https://github.com/MakieOrg/Makie.jl/blob/master/CHANGELOG.md)
- [Commits](https://github.com/MakieOrg/Makie.jl/commits)

Updates `MethodOfLines` to 0.11.9
- [Release notes](https://github.com/SciML/MethodOfLines.jl/releases)
- [Commits](https://github.com/SciML/MethodOfLines.jl/commits)

Updates `OrdinaryDiffEq` to 6.105.0
- [Release notes](https://github.com/SciML/OrdinaryDiffEq.jl/releases)
- [Commits](SciML/OrdinaryDiffEq.jl@v0.0.1...v6.105.0)

Updates `ModelingToolkit` to 11.4.0
- [Release notes](https://github.com/SciML/ModelingToolkit.jl/releases)
- [Changelog](https://github.com/SciML/ModelingToolkit.jl/blob/master/NEWS.md)
- [Commits](SciML/ModelingToolkit.jl@v0.0.1...v11.4.0)

Updates `SpecialFunctions` to 2.6.1
- [Release notes](https://github.com/JuliaMath/SpecialFunctions.jl/releases)
- [Commits](JuliaMath/SpecialFunctions.jl@v0.0.1...v2.6.1)

Updates `SafeTestsets` to 0.1.0
- [Release notes](https://github.com/YingboMa/SafeTestsets.jl/releases)
- [Commits](YingboMa/SafeTestsets.jl@v0.0.1...v0.1.0)

---
updated-dependencies:
- dependency-name: Documenter
  dependency-version: 1.16.1
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: LiveServer
  dependency-version: 1.5.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: DocumenterTools
  dependency-version: 0.1.21
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: FiniteVolumeMethod1D
  dependency-version: 1.1.4
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: ExplicitImports
  dependency-version: 1.14.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: NonlinearSolve
  dependency-version: 4.13.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: LinearSolve
  dependency-version: 3.55.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: DomainSets
  dependency-version: 0.7.16
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: ReferenceTests
  dependency-version: 0.10.6
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: SciMLBase
  dependency-version: 2.131.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: CairoMakie
  dependency-version: 0.15.8
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: MethodOfLines
  dependency-version: 0.11.9
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: OrdinaryDiffEq
  dependency-version: 6.105.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: ModelingToolkit
  dependency-version: 11.4.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: SpecialFunctions
  dependency-version: 2.6.1
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: SafeTestsets
  dependency-version: 0.1.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
...

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