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@Shamir-Lab

Ron Shamir's Lab

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  1. Recycler Recycler Public

    This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran H…

    Python 58 7

  2. SCAPP SCAPP Public

    SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-021-01068-z

    Python 31 6

  3. Multi-Omics-Cancer-Benchmark Multi-Omics-Cancer-Benchmark Public

    R 26 20

  4. PlasClass PlasClass Public

    A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007781

    Python 26 7

  5. Faucet Faucet Public

    This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye Rozov, Gil Goldshlager, Eran Halperin, and Ron Shamir

    C++ 18 3

  6. NEMO NEMO Public

    R 16 3

Repositories

Showing 10 of 38 repositories
  • aneuploidy-drivers-detection Public
    Shamir-Lab/aneuploidy-drivers-detection’s past year of commit activity
    R 0 MIT 0 0 0 Updated Apr 15, 2025
  • rfan-trial Public
    Shamir-Lab/rfan-trial’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 11, 2025
  • 4CAC Public
    Shamir-Lab/4CAC’s past year of commit activity
    Python 4 MIT 1 1 1 Updated Aug 28, 2024
  • PlasClass Public

    A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007781

    Shamir-Lab/PlasClass’s past year of commit activity
    Python 26 MIT 7 3 1 Updated Jun 17, 2024
  • syncmer_mapping Public

    Implementations of syncmer-based long read mappers

    Shamir-Lab/syncmer_mapping’s past year of commit activity
    C 7 MIT 1 0 0 Updated Mar 8, 2024
  • ABXAppropriatenessML Public

    Prediction of ABX appropriateness in ICU inpatients

    Shamir-Lab/ABXAppropriatenessML’s past year of commit activity
    Python 0 1 0 0 Updated Mar 3, 2024
  • PRS-imputation-panels Public
    Shamir-Lab/PRS-imputation-panels’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 31, 2024
  • DOMINO Public

    Network-based module discovery algorithm with high rate of empirically-validated term calls

    Shamir-Lab/DOMINO’s past year of commit activity
    Python 12 MIT 2 5 0 Updated Oct 22, 2023
  • StatTheGit4TAU Public Forked from aqeelanwar/StatTheGit

    Maintain GitHub Stats for More than 14 Days

    Shamir-Lab/StatTheGit4TAU’s past year of commit activity
    Python 0 MIT 4 0 0 Updated Aug 29, 2023
  • EnhancerSilencerDL Public

    Codebase for inferring single nucleotide activation and repression maps using deep-learning

    Shamir-Lab/EnhancerSilencerDL’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 17, 2023
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