Materials for the Nationwide Children's 2025 Coder Upgrade, a single-cell analysis coding boot camp run by SCRGOT (the Single Cell Research Group for Omics Technologies).
The boot camp will run from 9:00 AM to 4:00 PM each day, with a 1-hour lunch break from 12:00 PM to 1:00 PM. The schedule will be as follows:
| Level | Day | Topic |
|---|---|---|
| Beginner | Monday | Intro to single-cell and Seurat - through making sobj |
| Tuesday | Processing single-cell data and cell type annotation | |
| Wednesday | Combining datasets and data integration | |
| Thursday | Differential expression analysis, GSEA and experimental design | |
| Advanced | Monday | Understanding Seurat object structure, using public datasets |
| Tuesday | Spatial single-cell analysis | |
| Wednesday | Cell-cell communication analysis | |
| Thursday | 10X multiomics analysis |