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Hidden Markov Models

Video Lectures

For Developers

You can also see Python, Java, C++, C, Swift, Js, Php, or C# repository.

Requirements

Python

To check if you have a compatible version of Python installed, use the following command:

python -V

You can find the latest version of Python here.

Git

Install the latest version of Git.

Pip Install

pip3 install NlpToolkit-Hmm-Cy

Download Code

In order to work on code, create a fork from GitHub page. Use Git for cloning the code to your local or below line for Ubuntu:

git clone <your-fork-git-link>

A directory called Hmm will be created. Or you can use below link for exploring the code:

git clone https://github.com/starlangsoftware/Hmm-Py.git

Open project with Pycharm IDE

Steps for opening the cloned project:

  • Start IDE
  • Select File | Open from main menu
  • Choose Hmm-PY file
  • Select open as project option
  • Couple of seconds, dependencies will be downloaded.

Detailed Description

Hmm

Hmm modelini üretmek için

Hmm(self, states: set, observations: list, emittedSymbols: list)

Viterbi algoritması ile en olası State listesini elde etmek için

viterbi(self, s: list) -> list

For Contibutors

Setup.py file

  1. Do not forget to set package list. All subfolders should be added to the package list.
    packages=['Classification', 'Classification.Model', 'Classification.Model.DecisionTree',
              'Classification.Model.Ensemble', 'Classification.Model.NeuralNetwork',
              'Classification.Model.NonParametric', 'Classification.Model.Parametric',
              'Classification.Filter', 'Classification.DataSet', 'Classification.Instance', 'Classification.Attribute',
              'Classification.Parameter', 'Classification.Experiment',
              'Classification.Performance', 'Classification.InstanceList', 'Classification.DistanceMetric',
              'Classification.StatisticalTest', 'Classification.FeatureSelection'],
  1. Package name should be lowercase and only may include _ character.
    name='nlptoolkit_math',
  1. Package data should be defined and must ibclude pyx, pxd, c and py files.
    package_data={'NGram': ['*.pxd', '*.pyx', '*.c', '*.py']},
  1. Setup should include ext_modules with compiler directives.
    ext_modules=cythonize(["NGram/*.pyx"],
                          compiler_directives={'language_level': "3"}),

Cython files

  1. Define the class variables and class methods in the pxd file.
cdef class DiscreteDistribution(dict):

    cdef float __sum

    cpdef addItem(self, str item)
    cpdef removeItem(self, str item)
    cpdef addDistribution(self, DiscreteDistribution distribution)
  1. For default values in class method declarations, use *.
    cpdef list constructIdiomLiterals(self, FsmMorphologicalAnalyzer fsm, MorphologicalParse morphologicalParse1,
                               MetamorphicParse metaParse1, MorphologicalParse morphologicalParse2,
                               MetamorphicParse metaParse2, MorphologicalParse morphologicalParse3 = *,
                               MetamorphicParse metaParse3 = *)
  1. Define the class name as cdef, class methods as cpdef, and __init__ as def.
cdef class DiscreteDistribution(dict):

    def __init__(self, **kwargs):
        """
        A constructor of DiscreteDistribution class which calls its super class.
        """
        super().__init__(**kwargs)
        self.__sum = 0.0

    cpdef addItem(self, str item):
  1. Do not forget to comment each function.
    cpdef addItem(self, str item):
        """
        The addItem method takes a String item as an input and if this map contains a mapping for the item it puts the
        item with given value + 1, else it puts item with value of 1.

        PARAMETERS
        ----------
        item : string
            String input.
        """
  1. Function names should follow caml case.
    cpdef addItem(self, str item):
  1. Local variables should follow snake case.
	det = 1.0
	copy_of_matrix = copy.deepcopy(self)
  1. Variable types should be defined for function parameters, class variables.
    cpdef double getValue(self, int rowNo, int colNo):
  1. Local variables should be defined with types.
    cpdef sortDefinitions(self):
        cdef int i, j
        cdef str tmp
  1. For abstract methods, use ABC package and declare them with @abstractmethod.
    @abstractmethod
    def train(self, train_set: list[Tensor]):
        pass
  1. For private methods, use __ as prefix in their names.
    cpdef list __linearRegressionOnCountsOfCounts(self, list countsOfCounts)
  1. For private class variables, use __ as prefix in their names.
cdef class NGram:
    cdef int __N
    cdef double __lambda1, __lambda2
    cdef bint __interpolated
    cdef set __vocabulary
    cdef list __probability_of_unseen
  1. Write __repr__ class methods as toString methods
  2. Write getter and setter class methods.
    cpdef int getN(self)
    cpdef setN(self, int N)
  1. If there are multiple constructors for a class, define them as constructor1, constructor2, ..., then from the original constructor call these methods.
cdef class NGram:

    cpdef constructor1(self, int N, list corpus):
    cpdef constructor2(self, str fileName):
    def __init__(self,
                 NorFileName,
                 corpus=None):
        if isinstance(NorFileName, int):
            self.constructor1(NorFileName, corpus)
        else:
            self.constructor2(NorFileName)
  1. Extend test classes from unittest and use separate unit test methods.
class NGramTest(unittest.TestCase):

    def test_GetCountSimple(self):
  1. For undefined types use object as type in the type declarations.
cdef class WordNet:

    cdef object __syn_set_list
    cdef object __literal_list
  1. For boolean types use bint as type in the type declarations.
	cdef bint is_done
  1. Enumerated types should be used when necessary as enum classes, and should be declared in py files.
class AttributeType(Enum):
    """
    Continuous Attribute
    """
    CONTINUOUS = auto()
    """
  1. Resource files should be taken from pkg_recources package.
	fileName = pkg_resources.resource_filename(__name__, 'data/turkish_wordnet.xml')

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