This contains the code used in "Determining sufficient sequencing depth in RNA-Seq differential expression studies" by Andrew J. Bass, David G. Robinson, and John D Storey available at https://www.biorxiv.org/content/10.1101/635623v1.

Overview of directories:

• data/:

  • Processed ExpressionAtlas data (August 28 2018). See subdirectory for descriptions.

• analysis/:

  • main_figures.Rmd: R markdown file to reproduce the figures in the manuscript.
  • figures/: figure used in manuscript (generated from main_figures.Rmd).

git lfs is required to clone this directory. Please see https://git-lfs.github.com/ for additional information.