Add ingestion flow

Adds ingestion flow with S3 transfer. Relies on sciat-cli with branch cli-next. Stub for globus transfer is implemented taking config from global application config

cmd/openem-ingestor-app/app.go

@@ -23,7 +23,7 @@ func (w *WailsNotifier) OnTaskRemoved(id uuid.UUID) {
 	runtime.EventsEmit(w.AppContext, "folder-removed", id)
 }
 func (w *WailsNotifier) OnTaskFailed(id uuid.UUID, err error) {
-	runtime.EventsEmit(w.AppContext, "upload-failed", id, err)
+	runtime.EventsEmit(w.AppContext, "upload-failed", id, err.Error())
 }
 func (w *WailsNotifier) OnTaskCompleted(id uuid.UUID, seconds_elapsed int) {
 	runtime.EventsEmit(w.AppContext, "upload-completed", id, seconds_elapsed)

cmd/openem-ingestor-app/frontend/.gitignore

@@ -1 +1,3 @@
 node_modules/**
+dist/**
+!dist

configs/openem-ingestor-config.yaml

@@ -2,12 +2,22 @@ Scicat:
   Host: http://scicat:8080/api/v3
   AccessToken: "token"
 Transfer:
-  Method: S3
+  Method: Globus
   S3:
     Endpoint: s3:9000
     Bucket: landingzone
     Checksum: true
+    Location: "eu-west-1"
+    User: "minio_user"
+    Password: "minio_pass"
   Globus:
-    Endpoint: globus.psi.ch
+    ClientID: ""
+    ClientSecret: ""
+    RedirectURL: ""
+    Scopes: []
+    SourceCollection: ""
+    SourcePrefixPath: ""
+    DestinationCollection: ""
+    DestinationPrefixPath: ""
 Misc:
   ConcurrencyLimit: 2

go.mod

@@ -1,13 +1,18 @@
 module github.com/SwissOpenEM/Ingestor
 
-go 1.21
+go 1.22.2
 
-toolchain go1.22.1
+toolchain go1.22.6
 
 require (
-	github.com/google/uuid v1.4.0
+	github.com/SwissOpenEM/globus v0.0.0-20240822132653-119ec5e19eab
+	github.com/fatih/color v1.14.1
+	github.com/google/uuid v1.6.0
+	github.com/minio/minio-go/v7 v7.0.76
+	github.com/paulscherrerinstitute/scicat-cli v0.1.6-0.20240905105622-f6eaf0dd713f
 	github.com/spf13/viper v1.19.0
 	github.com/wailsapp/wails/v2 v2.9.1
+	golang.org/x/oauth2 v0.19.0
 )
 
 require (
@@ -30,10 +35,18 @@ require (
 )
 
 require (
+	github.com/Netflix/go-expect v0.0.0-20220104043353-73e0943537d2 // indirect
 	github.com/bep/debounce v1.2.1 // indirect
+	github.com/creack/pty v1.1.17 // indirect
+	github.com/dustin/go-humanize v1.0.1 // indirect
+	github.com/go-ini/ini v1.67.0 // indirect
 	github.com/go-ole/go-ole v1.2.6 // indirect
+	github.com/goccy/go-json v0.10.3 // indirect
 	github.com/godbus/dbus/v5 v5.1.0 // indirect
 	github.com/jchv/go-winloader v0.0.0-20210711035445-715c2860da7e // indirect
+	github.com/kballard/go-shellquote v0.0.0-20180428030007-95032a82bc51 // indirect
+	github.com/klauspost/compress v1.17.9 // indirect
+	github.com/klauspost/cpuid/v2 v2.2.8 // indirect
 	github.com/labstack/echo/v4 v4.10.2 // indirect
 	github.com/labstack/gommon v0.4.0 // indirect
 	github.com/leaanthony/go-ansi-parser v1.6.0 // indirect
@@ -42,18 +55,22 @@ require (
 	github.com/leaanthony/u v1.1.0 // indirect
 	github.com/mattn/go-colorable v0.1.13 // indirect
 	github.com/mattn/go-isatty v0.0.19 // indirect
+	github.com/mcuadros/go-version v0.0.0-20190830083331-035f6764e8d2 // indirect
+	github.com/minio/md5-simd v1.1.2 // indirect
 	github.com/pkg/browser v0.0.0-20210911075715-681adbf594b8 // indirect
 	github.com/pkg/errors v0.9.1 // indirect
 	github.com/rivo/uniseg v0.4.4 // indirect
+	github.com/rs/xid v1.6.0 // indirect
 	github.com/samber/lo v1.38.1 // indirect
 	github.com/tkrajina/go-reflector v0.5.6 // indirect
 	github.com/valyala/bytebufferpool v1.0.0 // indirect
 	github.com/valyala/fasttemplate v1.2.2 // indirect
 	github.com/wailsapp/go-webview2 v1.0.10 // indirect
 	github.com/wailsapp/mimetype v1.4.1 // indirect
-	golang.org/x/crypto v0.23.0 // indirect
+	golang.org/x/crypto v0.26.0 // indirect
 	golang.org/x/exp v0.0.0-20230905200255-921286631fa9 // indirect
-	golang.org/x/net v0.25.0 // indirect
-	golang.org/x/sys v0.20.0 // indirect
-	golang.org/x/text v0.15.0 // indirect
+	golang.org/x/net v0.28.0 // indirect
+	golang.org/x/sys v0.24.0 // indirect
+	golang.org/x/text v0.17.0 // indirect
+	gopkg.in/yaml.v2 v2.4.0 // indirect
 )

go.sum

@@ -1,25 +1,46 @@
+github.com/Netflix/go-expect v0.0.0-20220104043353-73e0943537d2 h1:+vx7roKuyA63nhn5WAunQHLTznkw5W8b1Xc0dNjp83s=
+github.com/Netflix/go-expect v0.0.0-20220104043353-73e0943537d2/go.mod h1:HBCaDeC1lPdgDeDbhX8XFpy1jqjK0IBG8W5K+xYqA0w=
+github.com/SwissOpenEM/globus v0.0.0-20240822132653-119ec5e19eab h1:Kn57UraLrMUdm/fXZM6qD60xh3vd3B9k1I42JIGvcqo=
+github.com/SwissOpenEM/globus v0.0.0-20240822132653-119ec5e19eab/go.mod h1:HiMwPdtUdztPpnA0TamNWBBRPGYjEJWXSRUIV5vjqXc=
 github.com/bep/debounce v1.2.1 h1:v67fRdBA9UQu2NhLFXrSg0Brw7CexQekrBwDMM8bzeY=
 github.com/bep/debounce v1.2.1/go.mod h1:H8yggRPQKLUhUoqrJC1bO2xNya7vanpDl7xR3ISbCJ0=
+github.com/creack/pty v1.1.17 h1:QeVUsEDNrLBW4tMgZHvxy18sKtr6VI492kBhUfhDJNI=
+github.com/creack/pty v1.1.17/go.mod h1:MOBLtS5ELjhRRrroQr9kyvTxUAFNvYEK993ew/Vr4O4=
 github.com/davecgh/go-spew v1.1.0/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
 github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
 github.com/davecgh/go-spew v1.1.2-0.20180830191138-d8f796af33cc h1:U9qPSI2PIWSS1VwoXQT9A3Wy9MM3WgvqSxFWenqJduM=
 github.com/davecgh/go-spew v1.1.2-0.20180830191138-d8f796af33cc/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
+github.com/dustin/go-humanize v1.0.1 h1:GzkhY7T5VNhEkwH0PVJgjz+fX1rhBrR7pRT3mDkpeCY=
+github.com/dustin/go-humanize v1.0.1/go.mod h1:Mu1zIs6XwVuF/gI1OepvI0qD18qycQx+mFykh5fBlto=
+github.com/fatih/color v1.14.1 h1:qfhVLaG5s+nCROl1zJsZRxFeYrHLqWroPOQ8BWiNb4w=
+github.com/fatih/color v1.14.1/go.mod h1:2oHN61fhTpgcxD3TSWCgKDiH1+x4OiDVVGH8WlgGZGg=
 github.com/frankban/quicktest v1.14.6 h1:7Xjx+VpznH+oBnejlPUj8oUpdxnVs4f8XU8WnHkI4W8=
 github.com/frankban/quicktest v1.14.6/go.mod h1:4ptaffx2x8+WTWXmUCuVU6aPUX1/Mz7zb5vbUoiM6w0=
 github.com/fsnotify/fsnotify v1.7.0 h1:8JEhPFa5W2WU7YfeZzPNqzMP6Lwt7L2715Ggo0nosvA=
 github.com/fsnotify/fsnotify v1.7.0/go.mod h1:40Bi/Hjc2AVfZrqy+aj+yEI+/bRxZnMJyTJwOpGvigM=
+github.com/go-ini/ini v1.67.0 h1:z6ZrTEZqSWOTyH2FlglNbNgARyHG8oLW9gMELqKr06A=
+github.com/go-ini/ini v1.67.0/go.mod h1:ByCAeIL28uOIIG0E3PJtZPDL8WnHpFKFOtgjp+3Ies8=
 github.com/go-ole/go-ole v1.2.6 h1:/Fpf6oFPoeFik9ty7siob0G6Ke8QvQEuVcuChpwXzpY=
 github.com/go-ole/go-ole v1.2.6/go.mod h1:pprOEPIfldk/42T2oK7lQ4v4JSDwmV0As9GaiUsvbm0=
+github.com/goccy/go-json v0.10.3 h1:KZ5WoDbxAIgm2HNbYckL0se1fHD6rz5j4ywS6ebzDqA=
+github.com/goccy/go-json v0.10.3/go.mod h1:oq7eo15ShAhp70Anwd5lgX2pLfOS3QCiwU/PULtXL6M=
 github.com/godbus/dbus/v5 v5.1.0 h1:4KLkAxT3aOY8Li4FRJe/KvhoNFFxo0m6fNuFUO8QJUk=
 github.com/godbus/dbus/v5 v5.1.0/go.mod h1:xhWf0FNVPg57R7Z0UbKHbJfkEywrmjJnf7w5xrFpKfA=
 github.com/google/go-cmp v0.5.9 h1:O2Tfq5qg4qc4AmwVlvv0oLiVAGB7enBSJ2x2DqQFi38=
 github.com/google/go-cmp v0.5.9/go.mod h1:17dUlkBOakJ0+DkrSSNjCkIjxS6bF9zb3elmeNGIjoY=
-github.com/google/uuid v1.4.0 h1:MtMxsa51/r9yyhkyLsVeVt0B+BGQZzpQiTQ4eHZ8bc4=
-github.com/google/uuid v1.4.0/go.mod h1:TIyPZe4MgqvfeYDBFedMoGGpEw/LqOeaOT+nhxU+yHo=
+github.com/google/uuid v1.6.0 h1:NIvaJDMOsjHA8n1jAhLSgzrAzy1Hgr+hNrb57e+94F0=
+github.com/google/uuid v1.6.0/go.mod h1:TIyPZe4MgqvfeYDBFedMoGGpEw/LqOeaOT+nhxU+yHo=
 github.com/hashicorp/hcl v1.0.0 h1:0Anlzjpi4vEasTeNFn2mLJgTSwt0+6sfsiTG8qcWGx4=
 github.com/hashicorp/hcl v1.0.0/go.mod h1:E5yfLk+7swimpb2L/Alb/PJmXilQ/rhwaUYs4T20WEQ=
 github.com/jchv/go-winloader v0.0.0-20210711035445-715c2860da7e h1:Q3+PugElBCf4PFpxhErSzU3/PY5sFL5Z6rfv4AbGAck=
 github.com/jchv/go-winloader v0.0.0-20210711035445-715c2860da7e/go.mod h1:alcuEEnZsY1WQsagKhZDsoPCRoOijYqhZvPwLG0kzVs=
+github.com/kballard/go-shellquote v0.0.0-20180428030007-95032a82bc51 h1:Z9n2FFNUXsshfwJMBgNA0RU6/i7WVaAegv3PtuIHPMs=
+github.com/kballard/go-shellquote v0.0.0-20180428030007-95032a82bc51/go.mod h1:CzGEWj7cYgsdH8dAjBGEr58BoE7ScuLd+fwFZ44+/x8=
+github.com/klauspost/compress v1.17.9 h1:6KIumPrER1LHsvBVuDa0r5xaG0Es51mhhB9BQB2qeMA=
+github.com/klauspost/compress v1.17.9/go.mod h1:Di0epgTjJY877eYKx5yC51cX2A2Vl2ibi7bDH9ttBbw=
+github.com/klauspost/cpuid/v2 v2.0.1/go.mod h1:FInQzS24/EEf25PyTYn52gqo7WaD8xa0213Md/qVLRg=
+github.com/klauspost/cpuid/v2 v2.2.8 h1:+StwCXwm9PdpiEkPyzBXIy+M9KUb4ODm0Zarf1kS5BM=
+github.com/klauspost/cpuid/v2 v2.2.8/go.mod h1:Lcz8mBdAVJIBVzewtcLocK12l3Y+JytZYpaMropDUws=
 github.com/kr/pretty v0.3.1 h1:flRD4NNwYAUpkphVc1HcthR4KEIFJ65n8Mw5qdRn3LE=
 github.com/kr/pretty v0.3.1/go.mod h1:hoEshYVHaxMs3cyo3Yncou5ZscifuDolrwPKZanG3xk=
 github.com/kr/text v0.2.0 h1:5Nx0Ya0ZqY2ygV366QzturHI13Jq95ApcVaJBhpS+AY=
@@ -50,8 +71,16 @@ github.com/mattn/go-isatty v0.0.14/go.mod h1:7GGIvUiUoEMVVmxf/4nioHXj79iQHKdU27k
 github.com/mattn/go-isatty v0.0.16/go.mod h1:kYGgaQfpe5nmfYZH+SKPsOc2e4SrIfOl2e/yFXSvRLM=
 github.com/mattn/go-isatty v0.0.19 h1:JITubQf0MOLdlGRuRq+jtsDlekdYPia9ZFsB8h/APPA=
 github.com/mattn/go-isatty v0.0.19/go.mod h1:W+V8PltTTMOvKvAeJH7IuucS94S2C6jfK/D7dTCTo3Y=
+github.com/mcuadros/go-version v0.0.0-20190830083331-035f6764e8d2 h1:YocNLcTBdEdvY3iDK6jfWXvEaM5OCKkjxPKoJRdB3Gg=
+github.com/mcuadros/go-version v0.0.0-20190830083331-035f6764e8d2/go.mod h1:76rfSfYPWj01Z85hUf/ituArm797mNKcvINh1OlsZKo=
+github.com/minio/md5-simd v1.1.2 h1:Gdi1DZK69+ZVMoNHRXJyNcxrMA4dSxoYHZSQbirFg34=
+github.com/minio/md5-simd v1.1.2/go.mod h1:MzdKDxYpY2BT9XQFocsiZf/NKVtR7nkE4RoEpN+20RM=
+github.com/minio/minio-go/v7 v7.0.76 h1:9nxHH2XDai61cT/EFhyIw/wW4vJfpPNvl7lSFpRt+Ng=
+github.com/minio/minio-go/v7 v7.0.76/go.mod h1:AVM3IUN6WwKzmwBxVdjzhH8xq+f57JSbbvzqvUzR6eg=
 github.com/mitchellh/mapstructure v1.5.0 h1:jeMsZIYE/09sWLaz43PL7Gy6RuMjD2eJVyuac5Z2hdY=
 github.com/mitchellh/mapstructure v1.5.0/go.mod h1:bFUtVrKA4DC2yAKiSyO/QUcy7e+RRV2QTWOzhPopBRo=
+github.com/paulscherrerinstitute/scicat-cli v0.1.6-0.20240905105622-f6eaf0dd713f h1:Q/oN9ZtduvFZrSbLfa6iW9iwiNZcuUgr4vaMIOldnAM=
+github.com/paulscherrerinstitute/scicat-cli v0.1.6-0.20240905105622-f6eaf0dd713f/go.mod h1:6V+MY3ONh5zkDppy+iWVCyob7JjjgDZqhoA5NgxMT8E=
 github.com/pelletier/go-toml/v2 v2.2.2 h1:aYUidT7k73Pcl9nb2gScu7NSrKCSHIDE89b3+6Wq+LM=
 github.com/pelletier/go-toml/v2 v2.2.2/go.mod h1:1t835xjRzz80PqgE6HHgN2JOsmgYu/h4qDAS4n929Rs=
 github.com/pkg/browser v0.0.0-20210911075715-681adbf594b8 h1:KoWmjvw+nsYOo29YJK9vDA65RGE3NrOnUtO7a+RF9HU=
@@ -66,6 +95,8 @@ github.com/rivo/uniseg v0.4.4 h1:8TfxU8dW6PdqD27gjM8MVNuicgxIjxpm4K7x4jp8sis=
 github.com/rivo/uniseg v0.4.4/go.mod h1:FN3SvrM+Zdj16jyLfmOkMNblXMcoc8DfTHruCPUcx88=
 github.com/rogpeppe/go-internal v1.9.0 h1:73kH8U+JUqXU8lRuOHeVHaa/SZPifC7BkcraZVejAe8=
 github.com/rogpeppe/go-internal v1.9.0/go.mod h1:WtVeX8xhTBvf0smdhujwtBcq4Qrzq/fJaraNFVN+nFs=
+github.com/rs/xid v1.6.0 h1:fV591PaemRlL6JfRxGDEPl69wICngIQ3shQtzfy2gxU=
+github.com/rs/xid v1.6.0/go.mod h1:7XoLgs4eV+QndskICGsho+ADou8ySMSjJKDIan90Nz0=
 github.com/sagikazarmark/locafero v0.4.0 h1:HApY1R9zGo4DBgr7dqsTH/JJxLTTsOt7u6keLGt6kNQ=
 github.com/sagikazarmark/locafero v0.4.0/go.mod h1:Pe1W6UlPYUk/+wc/6KFhbORCfqzgYEpgQ3O5fPuL3H4=
 github.com/sagikazarmark/slog-shim v0.1.0 h1:diDBnUNK9N/354PgrxMywXnAwEr1QZcOr6gto+ugjYE=
@@ -87,6 +118,7 @@ github.com/stretchr/objx v0.4.0/go.mod h1:YvHI0jy2hoMjB+UWwv71VJQ9isScKT/TqJzVSS
 github.com/stretchr/objx v0.5.0/go.mod h1:Yh+to48EsGEfYuaHDzXPcE3xhTkx73EhmCGUpEOglKo=
 github.com/stretchr/objx v0.5.2/go.mod h1:FRsXN1f5AsAjCGJKqEizvkpNtU+EGNCLh3NxZ/8L+MA=
 github.com/stretchr/testify v1.3.0/go.mod h1:M5WIy9Dh21IEIfnGCwXGc5bZfKNJtfHm1UVUgZn+9EI=
+github.com/stretchr/testify v1.6.1/go.mod h1:6Fq8oRcR53rry900zMqJjRRixrwX3KX962/h/Wwjteg=
 github.com/stretchr/testify v1.7.0/go.mod h1:6Fq8oRcR53rry900zMqJjRRixrwX3KX962/h/Wwjteg=
 github.com/stretchr/testify v1.7.1/go.mod h1:6Fq8oRcR53rry900zMqJjRRixrwX3KX962/h/Wwjteg=
 github.com/stretchr/testify v1.8.0/go.mod h1:yNjHg4UonilssWZ8iaSj1OCr/vHnekPRkoO+kdMU+MU=
@@ -112,13 +144,15 @@ go.uber.org/atomic v1.9.0 h1:ECmE8Bn/WFTYwEW/bpKD3M8VtR/zQVbavAoalC1PYyE=
 go.uber.org/atomic v1.9.0/go.mod h1:fEN4uk6kAWBTFdckzkM89CLk9XfWZrxpCo0nPH17wJc=
 go.uber.org/multierr v1.9.0 h1:7fIwc/ZtS0q++VgcfqFDxSBZVv/Xo49/SYnDFupUwlI=
 go.uber.org/multierr v1.9.0/go.mod h1:X2jQV1h+kxSjClGpnseKVIxpmcjrj7MNnI0bnlfKTVQ=
-golang.org/x/crypto v0.23.0 h1:dIJU/v2J8Mdglj/8rJ6UUOM3Zc9zLZxVZwwxMooUSAI=
-golang.org/x/crypto v0.23.0/go.mod h1:CKFgDieR+mRhux2Lsu27y0fO304Db0wZe70UKqHu0v8=
+golang.org/x/crypto v0.26.0 h1:RrRspgV4mU+YwB4FYnuBoKsUapNIL5cohGAmSH3azsw=
+golang.org/x/crypto v0.26.0/go.mod h1:GY7jblb9wI+FOo5y8/S2oY4zWP07AkOJ4+jxCqdqn54=
 golang.org/x/exp v0.0.0-20230905200255-921286631fa9 h1:GoHiUyI/Tp2nVkLI2mCxVkOjsbSXD66ic0XW0js0R9g=
 golang.org/x/exp v0.0.0-20230905200255-921286631fa9/go.mod h1:S2oDrQGGwySpoQPVqRShND87VCbxmc6bL1Yd2oYrm6k=
 golang.org/x/net v0.0.0-20210505024714-0287a6fb4125/go.mod h1:9nx3DQGgdP8bBQD5qxJ1jj9UTztislL4KSBs9R2vV5Y=
-golang.org/x/net v0.25.0 h1:d/OCCoBEUq33pjydKrGQhw7IlUPI2Oylr+8qLx49kac=
-golang.org/x/net v0.25.0/go.mod h1:JkAGAh7GEvH74S6FOH42FLoXpXbE/aqXSrIQjXgsiwM=
+golang.org/x/net v0.28.0 h1:a9JDOJc5GMUJ0+UDqmLT86WiEy7iWyIhz8gz8E4e5hE=
+golang.org/x/net v0.28.0/go.mod h1:yqtgsTWOOnlGLG9GFRrK3++bGOUEkNBoHZc8MEDWPNg=
+golang.org/x/oauth2 v0.19.0 h1:9+E/EZBCbTLNrbN35fHv/a/d/mOBatymz1zbtQrXpIg=
+golang.org/x/oauth2 v0.19.0/go.mod h1:vYi7skDa1x015PmRRYZ7+s1cWyPgrPiSYRe4rnsexc8=
 golang.org/x/sys v0.0.0-20190916202348-b4ddaad3f8a3/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20200810151505-1b9f1253b3ed/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20201119102817-f84b799fce68/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
@@ -128,19 +162,24 @@ golang.org/x/sys v0.0.0-20210630005230-0f9fa26af87c/go.mod h1:oPkhp1MJrh7nUepCBc
 golang.org/x/sys v0.0.0-20210927094055-39ccf1dd6fa6/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.0.0-20211103235746-7861aae1554b/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.0.0-20220811171246-fbc7d0a398ab/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
+golang.org/x/sys v0.5.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.6.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
-golang.org/x/sys v0.20.0 h1:Od9JTbYCk261bKm4M/mw7AklTlFYIa0bIp9BgSm1S8Y=
-golang.org/x/sys v0.20.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA=
+golang.org/x/sys v0.24.0 h1:Twjiwq9dn6R1fQcyiK+wQyHWfaz/BJB+YIpzU/Cv3Xg=
+golang.org/x/sys v0.24.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA=
 golang.org/x/term v0.0.0-20201126162022-7de9c90e9dd1/go.mod h1:bj7SfCRtBDWHUb9snDiAeCFNEtKQo2Wmx5Cou7ajbmo=
+golang.org/x/term v0.23.0 h1:F6D4vR+EHoL9/sWAWgAR1H2DcHr4PareCbAaCo1RpuU=
+golang.org/x/term v0.23.0/go.mod h1:DgV24QBUrK6jhZXl+20l6UWznPlwAHm1Q1mGHtydmSk=
 golang.org/x/text v0.3.6/go.mod h1:5Zoc/QRtKVWzQhOtBMvqHzDpF6irO9z98xDceosuGiQ=
-golang.org/x/text v0.15.0 h1:h1V/4gjBv8v9cjcR6+AR5+/cIYK5N/WAgiv4xlsEtAk=
-golang.org/x/text v0.15.0/go.mod h1:18ZOQIKpY8NJVqYksKHtTdi31H5itFRjB5/qKTNYzSU=
+golang.org/x/text v0.17.0 h1:XtiM5bkSOt+ewxlOE/aE/AKEHibwj/6gvWMl9Rsh0Qc=
+golang.org/x/text v0.17.0/go.mod h1:BuEKDfySbSR4drPmRPG/7iBdf8hvFMuRexcpahXilzY=
 golang.org/x/tools v0.0.0-20180917221912-90fa682c2a6e/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ=
 gopkg.in/check.v1 v0.0.0-20161208181325-20d25e280405/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
 gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15 h1:YR8cESwS4TdDjEe65xsg0ogRM/Nc3DYOhEAlW+xobZo=
 gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
 gopkg.in/ini.v1 v1.67.0 h1:Dgnx+6+nfE+IfzjUEISNeydPJh9AXNNsWbGP9KzCsOA=
 gopkg.in/ini.v1 v1.67.0/go.mod h1:pNLf8WUiyNEtQjuu5G5vTm06TEv9tsIgeAvK8hOrP4k=
+gopkg.in/yaml.v2 v2.4.0 h1:D8xgwECY7CYvx+Y2n4sBz93Jn9JRvxdiyyo8CTfuKaY=
+gopkg.in/yaml.v2 v2.4.0/go.mod h1:RDklbk79AGWmwhnvt/jBztapEOGDOx6ZbXqjP6csGnQ=
 gopkg.in/yaml.v3 v3.0.0-20200313102051-9f266ea9e77c/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
 gopkg.in/yaml.v3 v3.0.0-20210107192922-496545a6307b/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
 gopkg.in/yaml.v3 v3.0.1 h1:fxVm/GzAzEWqLHuvctI91KS9hhNmmWOoWu0XTYJS7CA=

internal/config.go

@@ -5,6 +5,7 @@ import (
 	"os"
 	"path"
 
+	"github.com/paulscherrerinstitute/scicat-cli/cmd/cliutils"
 	"github.com/spf13/viper"
 )
 
@@ -16,6 +17,9 @@ type Scicat struct {
 type S3 struct {
 	Endpoint string `string:"Endpoint"`
 	Bucket   string `string:"Bucket"`
+	Location string `string:"Location"`
+	User     string `string:"User"`
+	Password string `string:"Password"`
 	Checksum bool   `bool:"Checksum"`
 }
 
@@ -24,9 +28,9 @@ type Globus struct {
 }
 
 type Transfer struct {
-	Method string `string:"Method"`
-	S3     S3     `mapstructure:"S3"`
-	Globus Globus `mapstructure:"Globus"`
+	Method string                `string:"Method"`
+	S3     S3                    `mapstructure:"S3"`
+	Globus cliutils.GlobusConfig `mapstructure:"cliutils.GlobusConfig"`
 }
 
 type Misc struct {