Update is_plasmid to Follow SEP 055 Recommendations

[vinayakjeet]

Issue #72: Enhancement of SBOL Document Analysis

This update introduces significant enhancements to the analysis capabilities for SBOL documents. Two key functions have been added to improve the identification and characterization of genetic constructs within SBOL documents:

Added is_backbone Function

• Purpose: Determines if an SBOL Component or Feature represents a backbone structure.
• Implementation: Utilizes specific criteria based on roles and types to accurately identify backbone structures within an SBOL document. This is crucial for genetic engineering applications where backbone identification plays a key role in construct assembly and characterization.

Implemented is_plasmid Function

• Purpose: Checks if an SBOL Component or Feature is plasmid-like, enabling users to quickly identify plasmid structures within their genetic constructs.
• Implementation: Similar to is_backbone, this function uses specific criteria related to roles and types to determine if a component or feature is plasmid-like. This enhances the utility of SBOL documents in plasmid construction and analysis by providing an automated means to identify plasmid structures.

These functions significantly enhance the analytical capabilities of SBOL documents by providing targeted identification of backbone and plasmid structures. This advancement opens new avenues for streamlined genetic engineering processes and facilitates more efficient construct analysis and design.

Closes #72.

[jakebeal]

Something has gone wrote with your editing: the file is showing massive differences and incorrect indentations that cause it to be unable to pass tests. Can you please fix these issues?