GEM Smasher

Pipeline for extracting gene (sub)networks from gene expression matrixes

Tyler D. Biggs

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Overview

GEM Smasher is a knowledge-idependent approach for identifying networks of genes that differentiate groups of samples.

Installation / Setup

conda config --add channels conda-forge

conda install numpy notebook bokeh pandas scipy selenium datashader networkx flask phantomjs holoviews nodejs panel

jupyter labextension install @pyviz/jupyterlab_pyviz