We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
There was an error while loading. Please reload this page.
1 parent 451e7c5 commit e5011cbCopy full SHA for e5011cb
workflows/call_wf.nf
@@ -137,12 +137,12 @@ workflow CALL_WF {
137
138
UTILS_SAMPLE_STATS(sample_stats_ch)
139
140
- UTILS_COHORT_STATS(UTILS_SAMPLE_STATS.out.collect(sort:true))
+ UTILS_COHORT_STATS(UTILS_SAMPLE_STATS.out.collect())
141
142
emit:
143
cohort_stats_tsv = UTILS_COHORT_STATS.out
144
- gvcf_ch = GATK_HAPLOTYPE_CALLER.out.gvcf_ch.collect(sort:true)
+ gvcf_ch = GATK_HAPLOTYPE_CALLER.out.gvcf_ch.collect()
145
reformatted_lofreq_vcfs_tuple_ch = GATK_INDEX_FEATURE_FILE__LOFREQ.out.vcf_tuple.collect(sort:true)
146
- bgzip_ch = BGZIP__LOFREQ.out.collect(sort:true)
+ bgzip_ch = BGZIP__LOFREQ.out.collect()
147
samtools_bam_ch = SAMTOOLS_INDEX.out
148
}
0 commit comments