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remove sorting [ci skip]
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workflows/call_wf.nf

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -137,12 +137,12 @@ workflow CALL_WF {
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UTILS_SAMPLE_STATS(sample_stats_ch)
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140-
UTILS_COHORT_STATS(UTILS_SAMPLE_STATS.out.collect(sort:true))
140+
UTILS_COHORT_STATS(UTILS_SAMPLE_STATS.out.collect())
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emit:
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cohort_stats_tsv = UTILS_COHORT_STATS.out
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gvcf_ch = GATK_HAPLOTYPE_CALLER.out.gvcf_ch.collect(sort:true)
144+
gvcf_ch = GATK_HAPLOTYPE_CALLER.out.gvcf_ch.collect()
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reformatted_lofreq_vcfs_tuple_ch = GATK_INDEX_FEATURE_FILE__LOFREQ.out.vcf_tuple.collect(sort:true)
146-
bgzip_ch = BGZIP__LOFREQ.out.collect(sort:true)
146+
bgzip_ch = BGZIP__LOFREQ.out.collect()
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samtools_bam_ch = SAMTOOLS_INDEX.out
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}

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