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Consider the addition of TBtypeR subworkflow to facilitate mixed-infection analysis

enhancementNew feature or requestNew feature or request

Status: Open.

#253 In TORCH-Consortium/MAGMA;

· abhi18av opened on Dec 3, 2025

Simplify the process of updating and using tb-profiler latest/custom tbdb version

Status: Open.

#246 In TORCH-Consortium/MAGMA;

· abhi18av opened on Sep 4, 2025

Publish a modified multi-sample VCF suitable for Nextstrain builds

Status: Open.

#244 In TORCH-Consortium/MAGMA;

· abhi18av opened on Jul 17, 2025

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v2.2.3

Consider inclusion of optional fastp in the QC subworkflow

Status: Open.

#238 In TORCH-Consortium/MAGMA;

· abhi18av opened on May 15, 2025

Reconsider the default k-mer length

Status: Open.

#237 In TORCH-Consortium/MAGMA;

· abhi18av opened on May 9, 2025

MINOR_VARIANTS_ANALYSIS_WF:TBPROFILER_VCF_PROFILE__LOFREQ error on conda config

Status: Open.

#207 In TORCH-Consortium/MAGMA;

· Mxrcon opened on Jul 11, 2024

Transition to nf-core standard for pipeline and documentation

Status: Open.

#188 In TORCH-Consortium/MAGMA;

· abhi18av opened on Mar 18, 2024

Standardisation of MGIT-sputum-culture pairs

enhancementNew feature or requestNew feature or request

Status: Open.

#166 In TORCH-Consortium/MAGMA;

· vrennie opened on Aug 9, 2023

Speeding up minor variants analysis

enhancementNew feature or requestNew feature or request

Status: Open.

#165 In TORCH-Consortium/MAGMA;

· vrennie opened on Aug 9, 2023

Add info about the sequencing tech TAG and reflect that on the reports

enhancementNew feature or requestNew feature or request

Status: Open.

#150 In TORCH-Consortium/MAGMA;

· abhi18av opened on Apr 4, 2023

Remove old fastq.STATUS.tsv files

Status: Open.

#144 In TORCH-Consortium/MAGMA;

· LennertVerboven opened on Feb 20, 2023

Thread for possible enhancements in future

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

wish list

Status: Open.

#120 In TORCH-Consortium/MAGMA;

· abhi18av opened on Aug 30, 2022