v2.2.0: 2025.06 release with usability enhancements and maintenance work

[abhi18av]

What's Changed

• Update default_params.config by @vrennie in Update default_params.config #230
• update the default tree generation mechanism [ci skip] by @abhi18av in update the default tree generation mechanism [ci skip] #231
• Add a Customizable IQ-TREE option by @Mxrcon in Add a Customizable IQ-TREE option #232
• fix preprocess_multiqc_input.py script by @Mxrcon in fix preprocess_multiqc_input.py script #235
• Dev improve docs by @Mxrcon in Dev improve docs #239
• Relocate modules and subworkflows (v2.2.0) by @abhi18av in Relocate modules and subworkflows (v2.2.0) #241

Full Changelog: v2.1.0...v2.2.0

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This discussion was created from the release v2.2.0: 2025.06 release with usability enhancements and maintenance work.